Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5066
         (625 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y10746-1|CAA71735.1|  556|Homo sapiens methyl-CpG binding protei...    31   4.4  
AJ564845-1|CAD92308.1|  550|Homo sapiens methyl-CpG binding doma...    31   4.4  
AF120981-1|AAD50371.1|  605|Homo sapiens methyl-CpG binding prot...    31   4.4  
AF078830-1|AAD51442.1|  605|Homo sapiens methyl-CpG binding prot...    31   4.4  

>Y10746-1|CAA71735.1|  556|Homo sapiens methyl-CpG binding protein
           protein.
          Length = 556

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 502 KTGCPTPVVPTRAESQKVLPPVPPAKNL*SPIDMHSMSK*KARYPRFIYILIREAKTLYP 323
           K GC + +   R    + LPP PP+++   P + H  +   +    FIY  + E + L P
Sbjct: 222 KGGCDSKMAARRRPGAQPLPPPPPSQSP-EPTEPHPRALAPSPPAEFIYYCVDEDE-LQP 279

Query: 322 FLRKLRGRR 296
           +  + + R+
Sbjct: 280 YTNRRQNRK 288


>AJ564845-1|CAD92308.1|  550|Homo sapiens methyl-CpG binding domain
           protein 1, splice form 6 protein.
          Length = 550

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 502 KTGCPTPVVPTRAESQKVLPPVPPAKNL*SPIDMHSMSK*KARYPRFIYILIREAKTLYP 323
           K GC + +   R    + LPP PP+++   P + H  +   +    FIY  + E + L P
Sbjct: 271 KGGCDSKMAARRRPGAQPLPPPPPSQSP-EPTEPHPRALAPSPPAEFIYYCVDEDE-LQP 328

Query: 322 FLRKLRGRR 296
           +  + + R+
Sbjct: 329 YTNRRQNRK 337


>AF120981-1|AAD50371.1|  605|Homo sapiens methyl-CpG binding protein
           1 protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 502 KTGCPTPVVPTRAESQKVLPPVPPAKNL*SPIDMHSMSK*KARYPRFIYILIREAKTLYP 323
           K GC + +   R    + LPP PP+++   P + H  +   +    FIY  + E + L P
Sbjct: 271 KGGCDSKMAARRRPGAQPLPPPPPSQSP-EPTEPHPRALAPSPPAEFIYYCVDEDE-LQP 328

Query: 322 FLRKLRGRR 296
           +  + + R+
Sbjct: 329 YTNRRQNRK 337


>AF078830-1|AAD51442.1|  605|Homo sapiens methyl-CpG binding protein
           splice variant 1 protein.
          Length = 605

 Score = 30.7 bits (66), Expect = 4.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 502 KTGCPTPVVPTRAESQKVLPPVPPAKNL*SPIDMHSMSK*KARYPRFIYILIREAKTLYP 323
           K GC + +   R    + LPP PP+++   P + H  +   +    FIY  + E + L P
Sbjct: 271 KGGCDSKMAARRRPGAQPLPPPPPSQSP-EPTEPHPRALAPSPPAEFIYYCVDEDE-LQP 328

Query: 322 FLRKLRGRR 296
           +  + + R+
Sbjct: 329 YTNRRQNRK 337


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,055,192
Number of Sequences: 237096
Number of extensions: 2133915
Number of successful extensions: 8056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8054
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)