Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5066
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    31   0.67 
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    31   0.88 
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    29   2.0  
U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U22831-5|AAK20067.1|  100|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 255 FFSILSISVENFILLRPRNFRKKGYKVFASRINI 356
           FF +  + ++     +PR FRK+ YKV   RIN+
Sbjct: 225 FFQLKYLPIKRITHCQPRRFRKQLYKVIIFRINV 258


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 282 ENFILLRPRNF-RKKGYKVFASRINI*MNLGYRAFHFDMECMSIG 413
           + F+LL+   F +K+G+KV          L  R FHF M C  +G
Sbjct: 27  DEFVLLKVDGFLKKRGFKVAEQPSATKEELARRHFHFVMNCSKLG 71


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 18  HYYDCILYFYNHKFRQDYT---LKKYLISI*QQHVKNKSLT 131
           H +D ILYFYN K  +D T   ++K   S    HV  +S+T
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQSFKLDHVGGRSIT 532


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 361 IYILIREAKTLYPFLRKLRGRRSMKFSTLIESIEKKCTMLIY 236
           +Y+  R  K   P ++KLR R+S   + LI+SI     +LIY
Sbjct: 189 LYLSKRRKKMENPAMKKLRTRQSHDRTLLIQSIAATIFLLIY 230


>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 405 SIGD*RFLAGGTGGRTFCDSARVGTTGVGQPVLTI 509
           S+G  RFL+G  G   F   A +G  G+G+P++ +
Sbjct: 359 SVGK-RFLSGFGGQVDFIRGAAIGNDGLGKPIIAL 392


>U22831-5|AAK20067.1|  100|Caenorhabditis elegans Hypothetical
           protein F47D12.6 protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 196 ENITHTTYHVFDAHTHAYLLFI---VKLLFLTCCCQIEIKYFFR 74
           +   H    +   H HAY++ I   V L+ L   C + I YF R
Sbjct: 9   DQYVHLPSEISSKHDHAYIILILLSVILILLLLICNLCICYFIR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,098
Number of Sequences: 27780
Number of extensions: 322004
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)