Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5066
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 123 SLTINSRYACVCASNTWYVVCVMFSLLI*CIFY 221
           +L +   YA V +S ++YV C++  L I C  Y
Sbjct: 185 ALDLTPTYAVVSSSISFYVPCIVM-LGIYCRLY 216


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 260 LYTLYKRGKFHTPPSAQFS*KG 325
           LY  +KRGK+  P   + S  G
Sbjct: 605 LYGRFKRGKYEEPTVGEISQDG 626


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 497 GLPHPGGTYPRGVTKGPTTSTASQKSLITDRHAFHVKM 384
           G+   GG  P G+TK       S      +RH   V++
Sbjct: 79  GMTFNGGVGPNGLTKKQEMLVRSAIKYWVERHKHIVRL 116


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 36  LYFYNHK--FRQDYTLKKYLISI*QQH 110
           L  YNH     QD   K+YL+SI   H
Sbjct: 218 LLLYNHARLMSQDNHSKEYLVSIMFSH 244


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 490 PTPVVPTRAESQKVLPPVPPAKNL*SPIDMHSMSK*KAR 374
           PTPV PT    Q++L      +N     D H  +  K R
Sbjct: 157 PTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPR 195


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 FLY*FNVSFMLYLNNILALCTSSLYSL 273
           F Y +  SF+LY++  +    +  Y++
Sbjct: 223 FTYRYGFSFLLYVSGFITTEVAGTYAI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,344
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)