Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5065
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 167 7e-43
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 167 7e-43
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 44 8e-06
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 2.2
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 2.9
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 3.9
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 3.9
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 3.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 3.9
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 5.1
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 6.7
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 24 8.9
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 167 bits (406), Expect = 7e-43
Identities = 74/99 (74%), Positives = 88/99 (88%)
Frame = +1
Query: 34 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 213
+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7 LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66
Query: 214 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GF
Sbjct: 67 RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF 105
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +3
Query: 339 KVTAVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
K A GDIPGVRFK VKVA V L L+ EKKE+
Sbjct: 108 KGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 167 bits (406), Expect = 7e-43
Identities = 74/99 (74%), Positives = 88/99 (88%)
Frame = +1
Query: 34 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 213
+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7 LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66
Query: 214 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GF
Sbjct: 67 RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF 105
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +3
Query: 339 KVTAVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
K A GDIPGVRFK VKVA V L L+ EKKE+
Sbjct: 108 KGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 44.4 bits (100), Expect = 8e-06
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +1
Query: 142 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 321
G+ +G+ V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103
Query: 322 AGFRS*RSPPSVTFPEFVLRG 384
G R+ + P V + V+RG
Sbjct: 104 RGGRA-QDCPGVQY--HVVRG 121
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.2 bits (55), Expect = 2.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Frame = -3
Query: 380 LKTNSGNVTDGGDLYDRNP-------ATSTSSFSSMWFRQPSRGTNAVTFFPF 243
++T S V LYDR+P + +TSS++ R PS NA PF
Sbjct: 266 VQTTSDKVNASASLYDRSPSKKDITSSRNTSSYNLGSMRNPSTLKNAAHANPF 318
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 323 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 207
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 374 TNSGNVT-DGGDLYDRNPATSTSSFSSMWFRQPSRGT 267
T +GNVT GDL +P T TS++ S F+ S T
Sbjct: 943 TITGNVTITTGDLTTIDPTTFTSTYLSSGFQTVSNTT 979
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 79 WADKEFKKAHMGTKWKANPFGGASHAKGIV 168
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 3.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 211 IRKCV-RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFR 333
IR C+ R L K G V PR+ C++ IE+ +VL+ +R
Sbjct: 460 IRLCLNRPFLSKKGLYVNDMTPRNICIDSIED-VKVLIRAYR 500
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 374 TNSGNVTDGGDLYDRNPATSTSSFSSMWFRQPSR 273
TN+G T+G + ++ T++SS ++ FR SR
Sbjct: 20 TNNGKRTEGTPAFLKSGNTASSSSPTLQFRPTSR 53
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 374 TNSGNVTD-GGDLYDRNPATSTSSFSSMWFRQPSRGTNAV 258
+N+ N T+ GG L+++ T+ F + +QPS T+ +
Sbjct: 560 SNNANTTNTGGSLFNKPSTTTGGLFGNTTAQQPSTTTSGL 599
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 85 PPIAVHDGGSRAYAP 41
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.0 bits (52), Expect = 5.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 138 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSR 28
E + LP R + L FF +PSL + + +++ ++ S+
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNASQ 236
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 102 FLEFFVRPSLFTTVVHVLTRRSYSRGL 22
FL FF PSL T+V V + + R L
Sbjct: 220 FLRFFESPSLNTSVAKVYINQKFIRKL 246
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 419 VEREERHVGYFYPLKTNSGNVTDGGDLYDRNPATSTSSFSS 297
+ER L+ SGN +D G+L D S+S+ S
Sbjct: 454 LERARNDAEKIRQLEKASGNASDEGELNDEEEVISSSNTPS 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,298
Number of Sequences: 5004
Number of extensions: 39426
Number of successful extensions: 100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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