Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5065
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 165 2e-41
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 165 2e-41
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 146 9e-36
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 0.71
05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308 28 2.9
04_01_0440 + 5746474-5746662,5746895-5747251 28 2.9
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 27 5.0
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 6.6
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 8.7
11_06_0095 - 20030237-20031711,20031731-20033057 27 8.7
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 27 8.7
03_01_0298 + 2318836-2319051,2321238-2323106 27 8.7
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 8.7
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 165 bits (400), Expect = 2e-41
Identities = 74/104 (71%), Positives = 85/104 (81%)
Frame = +1
Query: 19 G*TPRIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 198
G T + RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 199 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGF
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKV+ VSLL L+KEKKE+
Sbjct: 110 AVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 165 bits (400), Expect = 2e-41
Identities = 74/104 (71%), Positives = 85/104 (81%)
Frame = +1
Query: 19 G*TPRIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 198
G T + RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 199 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGF
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
Score = 165 bits (400), Expect = 2e-41
Identities = 74/104 (71%), Positives = 85/104 (81%)
Frame = +1
Query: 19 G*TPRIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQ 198
G T + RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQ
Sbjct: 172 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQ 230
Query: 199 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
PNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGF
Sbjct: 231 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 274
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKV+ VSLL L+KEKKE+
Sbjct: 110 AVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKV+ VSLL L+KEKKE+
Sbjct: 280 AVGDIPGVRFKVVKVSGVSLLALFKEKKEK 309
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 146 bits (353), Expect = 9e-36
Identities = 65/94 (69%), Positives = 75/94 (79%)
Frame = +1
Query: 46 RKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 225
RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC
Sbjct: 82 RKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCA 140
Query: 226 RVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 327
RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 141 RVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 0.71
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -3
Query: 374 TNSGNVTDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGC 195
+N+ T + + P+T S S+ F P T+A + PF + +
Sbjct: 266 SNAFQTTSVSNPFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSL 325
Query: 194 LA-STPTFSRTMPF 156
A STP F+ + PF
Sbjct: 326 FANSTPGFASSSPF 339
>05_05_0019 - 21555727-21555777,21556252-21557213,21558242-21558308
Length = 359
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 407 ERHVGYFYPLKTNSGNVTDGGDLYDRNPATSTSSFSS 297
ER+ G FYP T N+ G D +P+ +TS+FSS
Sbjct: 304 ERNYGLFYPNGTPVYNI--GFDAASFSPSPTTSTFSS 338
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 75 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 173
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 343 TFTTGIPPLVLRRFLRCGLGNRHGG 269
TFT+G+ L+ L+CG+G H G
Sbjct: 1605 TFTSGVNDEALKYTLKCGVGYLHEG 1629
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 122 HFVPMWAFLNSLSAHRCSRRWFTCLRAVRILGV 24
H V WAFL + C F C+ V++ +
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQLFNL 609
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 118 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 222
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>11_06_0095 - 20030237-20031711,20031731-20033057
Length = 933
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 GIPVVKVT-AVGDIPGVRFKGVKVANVSLLPLYKEK 428
G+P+ V A+GD+ +R G+ +NV LLP EK
Sbjct: 598 GLPIDNVPDAIGDLFNLRHLGLWDSNVKLLPNSIEK 633
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 75 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 173
A+GG P GY+ G PF C KG+ PR
Sbjct: 456 AIGGMPAITVPAGYDGHGVPFGICFGGLKGYEPR 489
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 225 DAFADGRVGLLSFYTNFLEDDALCVRCTTERVSL 124
DAFA GLLS ++D LC+ C E VSL
Sbjct: 422 DAFAQCMGGLLSVV---VKDMRLCIECIDEGVSL 452
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 73 QRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 252
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 253 KVTAFVPR 276
K A+V R
Sbjct: 494 KYRAWVDR 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,296
Number of Sequences: 37544
Number of extensions: 308390
Number of successful extensions: 861
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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