Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5065
(439 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 183 2e-46
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 183 2e-46
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 183 2e-46
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 55 1e-07
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 48 1e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 48 1e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 48 1e-05
BC107593-1|AAI07594.1| 503|Homo sapiens FMN1 protein protein. 33 0.57
BC103692-1|AAI03693.1| 503|Homo sapiens FMN1 protein protein. 33 0.57
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 33 0.57
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 31 1.3
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 31 1.3
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 31 1.3
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 31 1.3
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 30 3.0
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 3.0
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 3.0
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 4.0
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 183 bits (446), Expect = 2e-46
Identities = 84/99 (84%), Positives = 92/99 (92%)
Frame = +1
Query: 34 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 213
+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAI
Sbjct: 7 LRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAI 66
Query: 214 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGF
Sbjct: 67 RKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF 105
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKVANVSLL LYK KKER
Sbjct: 111 AVGDIPGVRFKVVKVANVSLLALYKGKKER 140
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 183 bits (446), Expect = 2e-46
Identities = 84/99 (84%), Positives = 92/99 (92%)
Frame = +1
Query: 34 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 213
+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAI
Sbjct: 7 LRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAI 66
Query: 214 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGF
Sbjct: 67 RKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF 105
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKVANVSLL LYK KKER
Sbjct: 111 AVGDIPGVRFKVVKVANVSLLALYKGKKER 140
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 183 bits (446), Expect = 2e-46
Identities = 84/99 (84%), Positives = 92/99 (92%)
Frame = +1
Query: 34 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 213
+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAI
Sbjct: 7 LRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAI 66
Query: 214 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGF
Sbjct: 67 RKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF 105
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKVANVSLL LYK KKER
Sbjct: 111 AVGDIPGVRFKVVKVANVSLLALYKGKKER 140
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 54.8 bits (126), Expect = 1e-07
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKVANVSLL LYK KKER
Sbjct: 28 AVGDIPGVRFKVVKVANVSLLALYKGKKER 57
Score = 46.8 bits (106), Expect = 3e-05
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1
Query: 265 FVPRDGCLNHIEENDEVLVAGF 330
FVP DGCLN IEENDEVLVAGF
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGF 22
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 48.4 bits (110), Expect = 1e-05
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +1
Query: 124 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 303
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 304 NDEVLVAGFRS 336
+ VLV G R+
Sbjct: 105 HQIVLVEGGRT 115
>BC107593-1|AAI07594.1| 503|Homo sapiens FMN1 protein protein.
Length = 503
Score = 32.7 bits (71), Expect = 0.57
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 356 TDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVT 255
T GG++ ++P T+ +F +++ R P +GT A T
Sbjct: 388 TQGGEVKPKSPETALEAFKALFIRPPRKGTTADT 421
>BC103692-1|AAI03693.1| 503|Homo sapiens FMN1 protein protein.
Length = 503
Score = 32.7 bits (71), Expect = 0.57
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 356 TDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVT 255
T GG++ ++P T+ +F +++ R P +GT A T
Sbjct: 388 TQGGEVKPKSPETALEAFKALFIRPPRKGTTADT 421
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 32.7 bits (71), Expect = 0.57
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 356 TDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVT 255
T GG++ ++P T+ +F +++ R P +GT A T
Sbjct: 36 TQGGEVKPKSPETALEAFKALFIRPPRKGTTADT 69
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 601
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 601
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 261
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 261
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 231 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 285
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 262
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 320 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 162
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 262
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 102 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 230
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,310,672
Number of Sequences: 237096
Number of extensions: 1541345
Number of successful extensions: 3792
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3792
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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