Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5065
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical pr... 183 4e-47
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 51 4e-07
U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical p... 31 0.48
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p... 31 0.48
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL031621-3|CAA20935.2| 740|Caenorhabditis elegans Hypothetical ... 27 4.5
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 27 7.9
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 27 7.9
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 27 7.9
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 27 7.9
U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical pr... 27 7.9
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 27 7.9
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 27 7.9
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 27 7.9
>Z70684-7|CAA94601.1| 143|Caenorhabditis elegans Hypothetical
protein F28D1.7 protein.
Length = 143
Score = 183 bits (446), Expect = 4e-47
Identities = 81/97 (83%), Positives = 90/97 (92%)
Frame = +1
Query: 40 TARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRK 219
TARK HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRK
Sbjct: 9 TARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRK 68
Query: 220 CVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGF 330
CVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GF
Sbjct: 69 CVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGF 105
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 348 AVGDIPGVRFKGVKVANVSLLPLYKEKKER 437
AVGDIPGVRFK VKVAN SL+ L+K KKER
Sbjct: 111 AVGDIPGVRFKIVKVANTSLIALFKGKKER 140
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 50.8 bits (116), Expect = 4e-07
Identities = 29/64 (45%), Positives = 41/64 (64%)
Frame = +1
Query: 142 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 321
G SH KGIVL+ V K+PNS RKC V+L G +V A++P G ++++E+ +VLV
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128
Query: 322 AGFR 333
G R
Sbjct: 129 KGGR 132
>U97005-13|AAB52290.1| 868|Caenorhabditis elegans Hypothetical
protein F19F10.11b protein.
Length = 868
Score = 30.7 bits (66), Expect = 0.48
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 419 VEREERHVGYFYPLKTNSGNVTDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVTFF 249
VE++ R +G+ Y N TD GD P+TS +S SS R P R A F
Sbjct: 714 VEQQYRGIGFRYEEDEGESNTTDAGD----KPSTSGASTSS---RAPKRSLEARNSF 763
>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
protein F19F10.11a protein.
Length = 1121
Score = 30.7 bits (66), Expect = 0.48
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -3
Query: 419 VEREERHVGYFYPLKTNSGNVTDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAVTFF 249
VE++ R +G+ Y N TD GD P+TS +S SS R P R A F
Sbjct: 714 VEQQYRGIGFRYEEDEGESNTTDAGD----KPSTSGASTSS---RAPKRSLEARNSF 763
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 259 TAFVPRDGCLNHIEEN 306
T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668
>AL031621-3|CAA20935.2| 740|Caenorhabditis elegans Hypothetical
protein F28H6.6 protein.
Length = 740
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 377 KTNSGNVTDGGDLYDRNPATSTSSFSSMWFRQPSRGTNAV 258
+T + +DG ++ DRN S+SS+ R TNAV
Sbjct: 159 RTTTAEESDG-EVADRNAVQQNISWSSLTLRSQKNSTNAV 197
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 135 RVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIW 13
RV+ P H GFL +V + +L + Y++ + +W
Sbjct: 175 RVTDPQTDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 135 RVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIW 13
RV+ P H GFL +V + +L + Y++ + +W
Sbjct: 243 RVTDPQTDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 138 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIWI 10
E +LP RT VG F ++ L R SY + + +W+
Sbjct: 264 EPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWM 306
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 138 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIWI 10
E +LP RT VG F ++ L R SY + + +W+
Sbjct: 264 EPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWM 306
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 138 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIWI 10
E +LP RT VG F ++ L R SY + + +W+
Sbjct: 264 EPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWM 306
>U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical
protein D2024.4 protein.
Length = 294
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 87 VRPSLFTTVVHVLTRRSYSRG 25
VRP + TTV+HV+ R G
Sbjct: 189 VRPGIMTTVIHVMDRNPMKSG 209
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 135 RVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIW 13
RV+ P H GFL +V + +L + Y++ + +W
Sbjct: 175 RVTDPQTDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 135 RVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIW 13
RV+ P H GFL +V + +L + Y++ + +W
Sbjct: 243 RVTDPQTDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 138 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSRGLPIWI 10
E +LP RT VG F ++ L R SY + + +W+
Sbjct: 264 EPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWM 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,500
Number of Sequences: 27780
Number of extensions: 232563
Number of successful extensions: 587
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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