Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5065
(439 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 25 0.48
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 2.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 2.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 2.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 3.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 4.5
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 7.9
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 7.9
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 7.9
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 7.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 7.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 7.9
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 7.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 7.9
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 7.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 7.9
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 7.9
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 7.9
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 7.9
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 7.9
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 24.6 bits (51), Expect = 0.48
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 31 RIRTARKHVNHRRE----QRWADKEFKKAH--MGTKWKANPFGGASHAKGIVLEKVGVEA 192
R RT + + +RRE Q+ ++E++K M +++ +H K +VLE+ ++
Sbjct: 28 RSRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKS 87
Query: 193 KQPNSAIR 216
K P S R
Sbjct: 88 KSPESRDR 95
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 2.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 140 PKGLAFHFVPMWAFLNSLSA 81
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 2.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 140 PKGLAFHFVPMWAFLNSLSA 81
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 2.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -3
Query: 140 PKGLAFHFVPMWAFLNSLSA 81
PK +A H++ W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 3.4
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 199 PNSAIRKCV 225
PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 4.5
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +3
Query: 345 TAVGDIPGVR 374
+AVGD+PG+R
Sbjct: 43 SAVGDVPGLR 52
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 175 INKIEEHDTVLVVNIK 190
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 175 INKIEEHDTVLVVNIK 190
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 175 INKIEEHDTVLVVNIK 190
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 20.6 bits (41), Expect = 7.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 286 LNHIEENDEVLVAGFR 333
+N IEE+D VLV +
Sbjct: 186 INKIEEHDTVLVVNIK 201
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,650
Number of Sequences: 438
Number of extensions: 2746
Number of successful extensions: 23
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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