Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5064
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313...    30   1.6  
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677...    30   2.1  
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159...    28   6.5  
02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...    28   6.5  
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162...    28   8.6  

>03_06_0438 -
           33917678-33918084,33929568-33930402,33931055-33931335,
           33931358-33931451,33931549-33931857
          Length = 641

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 106 YHI-QFLRSLPSYTYFILLYHIQFLRSLPSYTYSILLYHIQFLRSLPSYTYYRISRIYV 279
           YH+ QF    P   + I  YH   LR++   ++ +L    Q L+ +P Y   + S+I V
Sbjct: 517 YHLKQFDTKGPENLHEIFNYHHSCLRNVVERSFGVLKSKWQILKGIPFYPMEKQSKIIV 575


>06_01_0883 +
           6768998-6769381,6769518-6769616,6769664-6769726,
           6770883-6770931,6771338-6771405,6771463-6771715,
           6772244-6772380,6772708-6772821,6773059-6773258,
           6773367-6773561,6773650-6773812
          Length = 574

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 112 IQFLRSLPSYTYFILLYHIQFLRSLPSYTYSILLY--HIQFLRSLPSYTYYRISRIYVWI 285
           I F + +P +  F LLY   F+R + ++    +LY   I F   +P  T      +YV  
Sbjct: 385 ILFTKEVPFWWKFYLLYSFFFVRKVVAHVVPFMLYCVVIPFSVLIPEVTVPVWGVVYVPT 444

Query: 286 SVLSLHVL 309
           ++  LH +
Sbjct: 445 TITLLHAI 452


>08_02_1416 -
           26915306-26915459,26915553-26915668,26915798-26915910,
           26915995-26916130,26916219-26916338,26916472-26916648,
           26916790-26916862,26916948-26917083,26917179-26918055,
           26918138-26918331,26918438-26918620,26918730-26918796,
           26918900-26919092,26919317-26919363,26919478-26919574,
           26919663-26919790,26919905-26920009,26920763-26920879
          Length = 1010

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 383 KYIQLSPLKVFKFVYIYSTYENISGNTCNDNTDIHTYMREI 261
           K  Q  P +VF+ VY++    + +G T  D+ DI T+  E+
Sbjct: 815 KQSQCKP-QVFRSVYVHWASRSRNGKTGEDHVDIITFYNEV 854


>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
 Frame = +3

Query: 192 LHIFYTPL-SYTISSLTPLLHILP---YFTHICMDICVVITC 305
           + I +T L S T+ S + ++++LP   Y+T +  ++C+ +TC
Sbjct: 43  IKIVFTELFSDTMRSFSQIIYVLPSFFYWTVLAFELCIGLTC 84


>01_06_1314 +
           36215607-36215734,36215911-36216043,36216135-36216281,
           36217172-36217348,36217469-36217717,36217917-36217964,
           36218364-36218419,36218639-36218720,36219260-36219515,
           36219563-36219629,36219688-36219724,36219918-36220030,
           36220838-36220988,36221352-36221538,36221768-36221841
          Length = 634

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 579 YIRNFAKEARRVHLRLK*INCTMEIVLNLKPFILRSHDNNHLLGS 445
           YI NF        L L  +N   +I+LN   FIL S    H+ G+
Sbjct: 418 YIMNFVCHGNLPMLLLSMVNNLQQILLNCLIFILNSATFTHVFGT 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,436
Number of Sequences: 37544
Number of extensions: 387482
Number of successful extensions: 977
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)