Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5064
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine re... 35 0.068
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 31 0.63
AC024200-11|AAF36000.1| 271|Caenorhabditis elegans Hypothetical... 31 0.63
AF098997-9|AAC68720.1| 325|Caenorhabditis elegans Serpentine re... 31 0.83
Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine re... 29 2.5
Z66523-2|CAA91410.1| 451|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z49966-4|CAA90244.1| 360|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine r... 28 5.9
Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF039042-4|AAC48247.2| 332|Caenorhabditis elegans Serpentine
receptor, class i protein27 protein.
Length = 332
Score = 34.7 bits (76), Expect = 0.068
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 37 PSILLYHIQFLRSLPSYTYSILLYHIQFLRS-LPSYTYFILLYHIQFLRSLPSYTYSILL 213
P L+YH ++ + + ++Y I F S L S+ +++L + I L + + L+
Sbjct: 14 PFHLVYHYYISGTVAFFLNTFVIYLIIFHSSRLDSFKFYLLAFQISCL--ICDLNTAFLM 71
Query: 214 YHIQFLRSLPSYTYYRISRIYVWISVLSLHVLPDIFSYV 330
I Y+Y +SR++ W S H+L IF+++
Sbjct: 72 QPIGLFPICAGYSYGILSRVFSW----SSHLLMTIFTFL 106
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 211 LYHIQFLRSLPSYTYYRISRIYVWISVLSLHVLPDIFSYVE*IYTNLKTFRGDSWMYL 384
+ H F R L Y + Y+W +S V+ ++F+ V I+ ++KT +W++L
Sbjct: 28 ILHDSFHRLLYFYVPFNSKYYYIWSFFVSFGVMYNMFAMVIFIFADIKTQYFWNWIFL 85
>AC024200-11|AAF36000.1| 271|Caenorhabditis elegans Hypothetical
protein Y71F9AL.6 protein.
Length = 271
Score = 31.5 bits (68), Expect = 0.63
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 30 VFSFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYT 209
++ Y P YTI ++ + HI+Y YT + +P+ HI + Y I + L IF
Sbjct: 25 IYHIYIP--YTIYTIHQIYHIYYIYHIYTYTK-SPIYHIHHIYQIYHIHIINTLYIIFGV 81
Query: 210 PLS-YTISS 233
L+ Y I+S
Sbjct: 82 FLACYAIAS 90
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 81 LLHIFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHILP 260
+ +I++ + YTI ++ + HI+Y YT + +P+ HI + Y I + L I
Sbjct: 22 IYYIYHIYIPYTIYTIHQIYHIYYIYHIYTYTK-SPIYHIHHIYQIYHIHIINTLYIIFG 80
Query: 261 YF 266
F
Sbjct: 81 VF 82
>AF098997-9|AAC68720.1| 325|Caenorhabditis elegans Serpentine
receptor, class i protein42 protein.
Length = 325
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +1
Query: 94 SILLYHIQFLRSLPSYTYFILLYHIQFLRSLPSYTYSILLYHIQFLRSLPSYTYYRISRI 273
+++L I ++ +Y YFIL++ + + L + S+L+ + R + +Y+ I+
Sbjct: 26 AVILLVIYKSENIDNYKYFILMFQVSCM--LADFHLSLLVQPMYLFRFM-TYSCVGIAAP 82
Query: 274 YVWISVLSL 300
Y+W S L +
Sbjct: 83 YIWASYLMI 91
>Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical
protein T07C12.8 protein.
Length = 965
Score = 29.5 bits (63), Expect = 2.5
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 51 LSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYTPLSYTIS 230
LSY +S L +F +P Y+++ L+ H +++ S F P S I
Sbjct: 97 LSYPLSPTNILSIVFLSP--YSLNYLSFSAH----RSTFSYCSFPTGHRSFVRPASANI- 149
Query: 231 SLTPLLH-ILPYFTHIC-MDICVVITCIARYIFVCRVN 338
L PL + +L Y + C MDI V+++ I+RY F ++
Sbjct: 150 -LLPLSYQLLGYGSFKCEMDIIVIVSDISRYFFYTEIS 186
>AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein23 protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 52 YHIQFLRSLPSYTYSILLYHIQFLRSLPSY-TYFILLYHIQFLRSLPSYTYSILLYHIQF 228
Y + ++ + + Y+ L H+ + Y YF Y I FL L S+ Y ++ IQ
Sbjct: 165 YCLLIVKDILALIYA-LWKHVNLKGGIDVYFIYFAFYYTIFFLPVLASFLYIPIMISIQK 223
Query: 229 LRSLPSYTYYRISRIYVWISV 291
LPS+ + W ++
Sbjct: 224 RAHLPSFQENEPQKFIFWQTI 244
>Z66523-2|CAA91410.1| 451|Caenorhabditis elegans Hypothetical
protein M05D6.2 protein.
Length = 451
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 35 LLLYSSIIYNFFAHSPLT-HILYSSIIYNFFAHSPLTHILY 154
L ++S H+ T + +YS++I F H+P TH +Y
Sbjct: 396 LCAFTSKFLRLCVHNRKTFYAMYSNLIQEFQGHTPSTHAIY 436
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 32 FLLLYSSIIYNFFAHSPLTHILY 100
F +YS++I F H+P TH +Y
Sbjct: 414 FYAMYSNLIQEFQGHTPSTHAIY 436
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 YSSIIYNFFAHSPLT-HILYSSIIYNFFAHSPLTHILY 208
++S H+ T + +YS++I F H+P TH +Y
Sbjct: 399 FTSKFLRLCVHNRKTFYAMYSNLIQEFQGHTPSTHAIY 436
>Z48245-1|CAA88290.1| 356|Caenorhabditis elegans Hypothetical
protein T27D1.3 protein.
Length = 356
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 38 LLYSSIIYNFFAHSPLTHILYSSIIYNFFAHSPLTHI-LYSSIIYNFFAHSPLTHILYS 211
+L + + F +SP+ I S + N H P I L +++ A +PL + L+S
Sbjct: 258 MLIACVAVYFVCYSPIQVIFLSKAVLNVTIHPPYDFILLMNALAMTCSASNPLLYTLFS 316
>Z49966-4|CAA90244.1| 360|Caenorhabditis elegans Hypothetical
protein F35C11.4 protein.
Length = 360
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 205 ILLYHIQFLRSLPSYTYYRISRIYVWISVLSLHVLPDIF 321
+ LYH +LR LPSY + + + IS LS + +F
Sbjct: 207 VKLYHPNYLRKLPSYVL--MGALSILISFLSCSAIKSLF 243
>AF038608-10|AAC25814.2| 327|Caenorhabditis elegans Serpentine
receptor, class z protein78 protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 97 ILLYHIQFLRSLP-SYTYFILLYHIQFLRSLPSYTYSILLYHIQFLRSLPSYTYYRISRI 273
+ YH+ F+RSLP T+ IL+ I F + L + + + ++ + R L + + ++
Sbjct: 88 VAYYHLGFVRSLPEQLTFVILVTFIIFAQYLCAEAFHLTIFLLAAQRLLVFFFPHTEKQV 147
Query: 274 YVWISVLSLHV 306
+ +++ H+
Sbjct: 148 ARFQKLMAKHI 158
>Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical
protein T04D3.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 81 LLH-IFYTPLSYTISSLTPLLHIFYTPLSYTISSLTPLLHIFYTPLSYTISSLTP 242
L+H + P ++ +P+ +F PLS+ + P + FY +S + ++ P
Sbjct: 44 LIHRLLSEPKGTSVPKSSPVNRLFPHPLSFELDPKWPAMDSFYNRISAAMRTIAP 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,209
Number of Sequences: 27780
Number of extensions: 400080
Number of successful extensions: 1378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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