Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5063
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 502 CSK*VLHKVVKFNLSTLHFFRRSINFY 422
           CS  +L +  +  L  L  F+R +NFY
Sbjct: 284 CSD-ILEEFERNRLQLLESFKRKVNFY 309


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 7   YSWGKKWCAGCKGSNRANT*RNGQEMC 87
           Y +    C GCKG  R +  +N    C
Sbjct: 197 YHYNALTCEGCKGFFRRSITKNAVYQC 223


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 452  PLLPEVHQFLLCLQNELCLHV 390
            P++PE  +F+    N + LH+
Sbjct: 1461 PIIPEAARFIEVATNSITLHL 1481


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 380 FSKVHVDITHSEDKVKIDGPPEEVERAQVELDNFVKNLLATLTYVELSVDPKFFKHIIG 556
           FS+V     + +D VKI   P+ V       D  V+ +L++  Y++ S + +FFK  +G
Sbjct: 67  FSQVLKKAENFKDVVKIWVGPKLVICLIDPRD--VEIILSSNVYIDKSTEYRFFKPWLG 123


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 242 NKIGLALSKVCEKANS 289
           NKI LA SK   KANS
Sbjct: 554 NKISLATSKSFIKANS 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,472
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)