Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5059
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    31   0.19 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   0.78 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    28   1.4  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   2.4  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   5.5  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   5.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.6  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 43  GGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQ 153
           G GY + G  E+ +  +S +D+ +E G   RKRK  +
Sbjct: 67  GAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSK 103


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 134 VNANRNNKTRIRHKLIKLKMGPNKMRKMMRNLEMRQTYQ 250
           V   +  K +IR K  ++    N+ RK+ R  E+RQ Y+
Sbjct: 23  VQIEQLRKAQIREKAREITEERNRQRKLQRERELRQKYE 61


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 97   SDDEYDEFGRKKRKRKSEQQDKNKTQA 177
            SDDE  + G+KK+K + +++ K+K ++
Sbjct: 932  SDDEEKQSGKKKKKDRKKRKSKSKQES 958


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 88  EHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQT 186
           E+ + +E    G KK+K+K +   K KT   QT
Sbjct: 34  ENDAAEEGASNGEKKKKKKKKSSKKKKTPQEQT 66


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 121 GRKKRKRKSEQQDKNKTQAH 180
           G KKRKRK   Q+K + + H
Sbjct: 21  GNKKRKRKERGQNKRREKIH 40


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 119 LEERNVNANRNNKTRIRHKLIKLKMGPNKMRKMMRNLEMRQTYQNTI 259
           L E+     +N   + + +L +L   P K R+ ++NL +  T  N +
Sbjct: 380 LSEQIQRQEKNKSYKDKKRLKELFNDPRKFRQAVKNLRLSNTRDNIV 426


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 67  VVEYRRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQ 183
           V  +R R  S   +YD  GR+   R+   + K + + H+
Sbjct: 124 VPHHRERSPSPPPQYDNHGRRLNTREIRYKKKLEDERHR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,171
Number of Sequences: 5004
Number of extensions: 29089
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)