Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5059
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 37 0.016
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 37 0.016
06_01_0892 - 6827510-6827590,6829348-6830412 33 0.15
09_04_0539 - 18416184-18416830,18417983-18419057 32 0.46
08_01_1081 + 11058119-11059756 31 0.81
07_01_0463 + 3502708-3503535 30 1.4
06_01_0615 - 4454099-4454266,4454366-4454509,4454632-4454790,445... 30 1.4
05_03_0368 - 13127536-13128429 30 1.9
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 30 1.9
03_02_0674 - 10329933-10331537 29 2.5
04_03_0241 - 13243938-13244453,13244538-13246334 29 3.3
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 29 3.3
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 29 3.3
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 29 4.3
09_01_0019 + 403078-404211 28 7.5
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 28 7.5
02_05_1238 + 35151605-35151613,35151682-35151982,35152067-351523... 28 7.5
11_06_0585 - 25230630-25230743,25230840-25231122,25231203-252313... 27 9.9
07_01_0507 + 3777505-3777762,3780286-3780390,3780740-3780796,378... 27 9.9
02_02_0183 + 7576901-7576908,7577666-7578176 27 9.9
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 7 PKFGEVEARTGYGGGYNERGVVEY----RRREHSSDDE---YDEFGRKKRK-RKSEQQDK 162
P E R G GGGY E E RRR+ + +D+ YDEFG K+K R QQ +
Sbjct: 239 PGHNEGGVRGGRGGGYKELDEEELEEVKRRRKEAEEDDGEMYDEFGNLKKKFRAKTQQTE 298
Query: 163 N 165
N
Sbjct: 299 N 299
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Frame = +1
Query: 7 PKFGEVEARTGYGGGYNERGVVEY----RRREHSSDDE---YDEFGRKKRK-RKSEQQDK 162
P E R G GGGY E E RRR+ + +D+ YDEFG K+K R QQ +
Sbjct: 244 PGHNEGGVRGGRGGGYKELDEEELEEVKRRRKEAEEDDGEMYDEFGNLKKKFRAKTQQTE 303
Query: 163 N 165
N
Sbjct: 304 N 304
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +1
Query: 7 PK-FGEVEARTGYGGGYNERGVVE---YRRREHSSDDEYD-EFGRKKR-KRKSEQQDKNK 168
PK + + E + YG GY E+ E Y + + DEY +GRKK S+ + K +
Sbjct: 308 PKPYSQEETQGSYGYGYGEKPAYESGGYNKPSYGGGDEYQGGYGRKKHDDNDSDDEKKQR 367
Query: 169 TQAH 180
Q H
Sbjct: 368 YQKH 371
>09_04_0539 - 18416184-18416830,18417983-18419057
Length = 573
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 19 EVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKR 135
E AR+G GG Y E G V R + SSD + D+ G +R
Sbjct: 287 EEAARSGAGGFYRENGSVVGRLVKGSSDSDADDHGYDER 325
>08_01_1081 + 11058119-11059756
Length = 545
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/30 (36%), Positives = 23/30 (76%)
Frame = +1
Query: 79 RRREHSSDDEYDEFGRKKRKRKSEQQDKNK 168
+RR+++ DDE +E G K +K+K++ ++K +
Sbjct: 312 KRRKNNDDDEEEEPGLKVKKKKNKNEEKER 341
>07_01_0463 + 3502708-3503535
Length = 275
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 79 RRREHSSDDEYDEFGRKKRKRKSEQQDKNKT 171
+ ++ D + +E G+KK K+K ++ DK KT
Sbjct: 152 KEKKKDKDGDEEEEGKKKEKKKKDKGDKEKT 182
>06_01_0615 -
4454099-4454266,4454366-4454509,4454632-4454790,
4454871-4454981,4455511-4455756,4455871-4455976,
4457180-4457217
Length = 323
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 84 TSVLYNSALIITAAVTGTSFNFTKFWC 4
T+ L SA+++ + V G NFT FWC
Sbjct: 221 TASLTFSAILLVSLVMGIVLNFTMFWC 247
>05_03_0368 - 13127536-13128429
Length = 297
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 58 ERGVVEYRRREH---SSDDEYDEFGRKKRKRKSEQQDK 162
ERG +RRR + SSDD++ R++R+R+ + D+
Sbjct: 259 ERGRSRHRRRSYDDDSSDDDHHTLRRRRRRRRKDAFDR 296
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 37 GYGGGYNERGVVEYRRREHSSDDEYDE 117
G GGG+N RRR H DD+ +E
Sbjct: 6 GGGGGFNAPYTASARRRNHEDDDDEEE 32
>03_02_0674 - 10329933-10331537
Length = 534
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/77 (22%), Positives = 37/77 (48%)
Frame = +2
Query: 2 MHQNLVKLKLVPVTAAVIMSAEL*STDVVSILPMMNMTNLEERNVNANRNNKTRIRHKLI 181
M ++L+ L+LVPVTA + + +L +V L + + R + +R +L+
Sbjct: 69 MAESLLTLRLVPVTARTLATTDL--AGIVGALRRHESERIRGLATDIVRGWRVAVRRELV 126
Query: 182 KLKMGPNKMRKMMRNLE 232
++ + K+ + +E
Sbjct: 127 RIGIAMEKLSQTPERIE 143
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 25 EARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQDKN 165
+ R G GG NER +RRRE+ +D++ F +R+R + D N
Sbjct: 347 DGRRGRGGRRNER---PWRRREY--NDDHPSFFDNQRRRDHDGDDDN 388
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 85 REHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQT 186
+++ S DEY G++K +RKS +++ NK + T
Sbjct: 534 QDNDSGDEYTARGKQKGRRKSREKNINKEPSRGT 567
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 43 GGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQ 183
GGG E+ E RR+ ++E ++RKR+ E++ + + + +
Sbjct: 475 GGGKGEKEREEEERRQREKEEEERRRQEEERKRREEEEKERREREEE 521
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 52 YNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQD 159
Y ++GV Y + S +EY++ ++KR++K EQQ+
Sbjct: 380 YAQQGVA-YLIDKEDSIEEYEKVAKQKREKKLEQQE 414
>09_01_0019 + 403078-404211
Length = 377
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 79 RRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQ 183
R+R SD++ + KKR RKS ++D+ + ++H+
Sbjct: 257 RKRHERSDEDSESDSDKKRHRKS-RKDRKRRRSHR 290
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 79 RRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQAH 180
+R++ S ++ + G K+RK+ ++ KT+AH
Sbjct: 895 KRKDRSKHEDEEGGGEKRRKKGGRRRKDQKTKAH 928
>02_05_1238 +
35151605-35151613,35151682-35151982,35152067-35152392,
35153059-35153155,35153244-35153581
Length = 356
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 82 RREHSSDDEYDEFGR--KKRKRKSEQQDKNK 168
+++ +D+ DE G+ KK+K++ E+QD K
Sbjct: 170 KKQQQQEDDGDEAGKEDKKKKKEKEEQDDQK 200
>11_06_0585 -
25230630-25230743,25230840-25231122,25231203-25231373,
25231451-25232298,25232384-25232812,25232889-25233266,
25233396-25233488
Length = 771
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 434 PHQAPALVTAPPRLQK 481
PH PALV+APP ++K
Sbjct: 403 PHPPPALVSAPPAVEK 418
>07_01_0507 +
3777505-3777762,3780286-3780390,3780740-3780796,
3781534-3781863
Length = 249
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 73 EYRRREHSSDDEYDEFGRKKRKRKSEQQDKNK 168
E RRR+ ++E +E+ R+KR R+ ++ + +
Sbjct: 4 ERRRRKREEEEEAEEWERRKRGRRKRRKRRRR 35
>02_02_0183 + 7576901-7576908,7577666-7578176
Length = 172
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 16 GEVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRK 144
G+VEA G GGG G + RR E + R +R+R+
Sbjct: 97 GDVEAEGGGGGGGGGVGWMGMRRAEGGGSGSVARWRRWRRRRR 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,008
Number of Sequences: 37544
Number of extensions: 180643
Number of successful extensions: 661
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -