Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5059
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 70 1e-12
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 31 0.72
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 29 3.8
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 28 5.1
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 28 5.1
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 28 5.1
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 5.1
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 6.7
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 6.7
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/51 (58%), Positives = 41/51 (80%)
Frame = +1
Query: 1 NAPKFGEVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQ 153
NAPK ++E RTGYGGGYN+R VEY +R++ D+E+DEFGRKK+K+ +Q
Sbjct: 94 NAPKLADLERRTGYGGGYNDRQNVEYVKRDY--DEEFDEFGRKKKKKGEDQ 142
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 52 YNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQAHQ 183
+ ++G E + +H SDD+ D +KK+ R S++ + K + H+
Sbjct: 1118 HRDKGRKEEKSHKHRSDDD-DSSPKKKKHRDSDESSEKKKKKHK 1160
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 73 EYRRREHSSDDEYDEFGRKKRKRKSEQQDKNK 168
E RRR SDD D + RKRK ++ K +
Sbjct: 160 EKRRRRDDSDDSSDSDEEEDRKRKKSKESKKE 191
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 88 EHSSDDEYDEFGRKKRKRKSEQQDKNKTQA 177
+ SS+DE +E KKR +KS+++ + QA
Sbjct: 307 DSSSEDEEEEKSSKKRSKKSKKESDEEQQA 336
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 106 HHRKNAHDVCTLQLRA-HYNRRRNRYELQLHQIL 8
H RK A +V L LRA Y+ R +R E H IL
Sbjct: 110 HQRKIAREVMVLNLRAIFYDNREDREERWKHAIL 143
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 106 HHRKNAHDVCTLQLRA-HYNRRRNRYELQLHQIL 8
H RK A +V L LRA Y+ R +R E H IL
Sbjct: 110 HQRKIAREVMVLNLRAIFYDNREDREERWKHAIL 143
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 106 HHRKNAHDVCTLQLRA-HYNRRRNRYELQLHQIL 8
H RK A +V L LRA Y+ R +R E H IL
Sbjct: 110 HQRKIAREVMVLNLRAIFYDNREDREERWKHAIL 143
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = -3
Query: 392 FISGEAAFPLSYTSGTLSFRLSLTLDLSASSFLEEVPLSSSLPHKSY 252
F G P+S S +LS LSL+LDL SSF P+ S SY
Sbjct: 80 FGRGFCVSPVSL-SLSLSLSLSLSLDLFLSSFSPLFPIEPSSSSSSY 125
>AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical
protein H06I04.3b protein.
Length = 716
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 10 KFGEVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQD 159
K G+ + G G+N E SSD E DE ++K R Q D
Sbjct: 540 KKGKKGGKGGEDDGFNTNDADEQASESESSDAEMDEVAKEKLSRFDAQID 589
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 10 KFGEVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQD 159
K G+ + G G+N E SSD E DE ++K R Q D
Sbjct: 540 KKGKKGGKGGEDDGFNTNDADEQASESESSDAEMDEVAKEKLSRFDAQID 589
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 10 KFGEVEARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQD 159
K G+ + G G+N E SSD E DE ++K R Q D
Sbjct: 540 KKGKKGGKGGEDDGFNTNDADEQASESESSDAEMDEVAKEKLSRFDAQID 589
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 88 EHSSDDEYDEFGRKKRKRKSEQQDKNK 168
+ SDDE DE +KK KRKS+ +K+K
Sbjct: 191 DEDSDDEDDEKAKKK-KRKSKGAEKSK 216
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 88 EHSSDDEYDEFGRKKRKRKSEQQDKNK 168
+ SDDE DE +KK KRKS+ +K+K
Sbjct: 191 DEDSDDEDDEKAKKK-KRKSKGAEKSK 216
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 79 RRREHSSDDEYDEFGRKKRKRKSEQQDKNKTQ 174
R+R HSS D K+ +R+S +D ++T+
Sbjct: 246 RKRSHSSSDRRGRRTSKESRRRSRSRDTHRTR 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,791
Number of Sequences: 27780
Number of extensions: 164601
Number of successful extensions: 706
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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