Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5059
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +1

Query: 25  EARTGYGGGYNERGVVEYRRREHSSDDEYDEFGRKKRKRKSEQQDKNK 168
           E R  Y     ER     R RE+  D  YD+    + K   E+  + +
Sbjct: 240 EDRNSYRND-GERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRR 286


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 347 TLSFRLSLTLDLSASSFLEEVPLSSSLPHKS 255
           T+  R  L+     + FL+ VP+  +LP ++
Sbjct: 198 TIMMRTGLSRQAEYTDFLKSVPIFKNLPEET 228


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 175 LVSYSCLVVPICVYVSFFQ 119
           +V+YS ++    V++SFFQ
Sbjct: 569 IVNYSIMIFLSAVFISFFQ 587


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 66  SALIITAAVTGTSFNFTKFWCI 1
           +A ++ AA+TGT       WC+
Sbjct: 468 AASVVAAALTGTYPTLLPQWCL 489


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 514 VRYSN*NRQTYFLESGRS 461
           V Y+N   ++YF E GRS
Sbjct: 9   VSYTNKKDESYFDEGGRS 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,938
Number of Sequences: 438
Number of extensions: 2188
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)