Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5058
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical ...    57   2e-08
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical
           protein F53E10.1 protein.
          Length = 339

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
 Frame = +2

Query: 398 WTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEK-NNFVTARAFP 574
           W  +G +K ++ YPIKSC PV +   +C+ LG     L DRV ++++E    F+TAR  P
Sbjct: 39  WVPIGIVKGLHIYPIKSCKPVDVFAFKCTKLGPMMEELEDRVFVLVEESTGKFITARQKP 98

Query: 575 ELLTVQPTIRSSILTVKHAQMEPLHVNLARGCSTTKK*NGLRLGVYQFPVYDCGFEAS 748
           +L+ V+  +   IL +       L V+L +     +          Q   YDCG E +
Sbjct: 99  KLVNVESYMTDGILEISVPGHPKLSVDLKKVVENGRTIRATLFDNLQQDGYDCGDEVA 156


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
 Frame = +2

Query: 389 PENWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEK-NNFVTAR 565
           P  W  VG +K+++ +PIKSC  V +   +C+ LG   G L DR  M+++E    F+TAR
Sbjct: 36  PREWVPVGVVKSLHIFPIKSCKSVDVFAFKCTKLGPVMGDLEDRAFMLVEESTGKFITAR 95

Query: 566 AFPELLTVQPTIRSSILTVKHAQMEPLHVNLARGCSTTKK*NGLRLGVYQFPVYDCGFEA 745
             P+L+ V+  +   +L V       L V+L +     +          +   YDCG E 
Sbjct: 96  QKPKLVHVENYMTDGMLEVTVPGQPKLSVDLRKVLQNKRTIRATLFKNLKQDGYDCGDEV 155

Query: 746 S 748
           +
Sbjct: 156 A 156


>AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical
           protein F56A11.5 protein.
          Length = 340

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = +2

Query: 374 KKIKIPE-NWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNN 550
           KK   P+  W  VG +K+++ YPIKSC    + +  C+  G + G   DR  +VI+    
Sbjct: 33  KKYSKPKAEWVPVGRIKSLHLYPIKSCKGKEVFQYRCTPFGPRLGEYLDRHFLVINSDGK 92

Query: 551 FVTARAFPELLTVQPTIRSSILTVKHAQMEPLHVNLARGCSTTKK*NGLRLGVYQFPVYD 730
           F TAR  P+++ ++  I+  I+ V +   E     +    +     +G      +   YD
Sbjct: 93  FYTARTKPQMVLIETLIKDGIVRVSYPGREDAQFKIEDVKANKDLRSGFLHVDLRTDGYD 152

Query: 731 CG 736
           CG
Sbjct: 153 CG 154


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 30   INLLFDPHIIPDFTKQFN*TISLHYNCTLENI 125
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 30   INLLFDPHIIPDFTKQFN*TISLHYNCTLENI 125
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = +2

Query: 518 RVVMVIDEKNNFVTARAFPELLTVQP------TIRSSILTVKHAQMEPLHVNLAR----- 664
           ++ + I + N+F+   AF +++TV+       T+  S+L      + P H +L       
Sbjct: 408 KIAVSIRKLNHFLKVTAFLDVITVENVVFLKHTLLPSLLPRNFNLITPTHSDLQSLAHHI 467

Query: 665 GCSTTKK*NGLRLGVYQFP 721
           GC   KK NG+    + FP
Sbjct: 468 GCPVVKKTNGIEYNQWLFP 486


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = +2

Query: 518 RVVMVIDEKNNFVTARAFPELLTVQP------TIRSSILTVKHAQMEPLHVNLAR----- 664
           ++ + I + N+F+   AF +++TV+       T+  S+L      + P H +L       
Sbjct: 408 KIAVSIRKLNHFLKVTAFLDVITVENVVFLKHTLLPSLLPRNFNLITPTHSDLQSLAHHI 467

Query: 665 GCSTTKK*NGLRLGVYQFP 721
           GC   KK NG+    + FP
Sbjct: 468 GCPVVKKTNGIEYNQWLFP 486


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 652 NMQRFHLRVFHSKNGA---PNCRLHSQ*LRKSPRCNEVVFFVYNHYDSV 515
           + Q +H +  H  NGA   P   +H+      P  N+V+   YNH++ V
Sbjct: 82  HQQHYHQQSHHHYNGAAAAPVINVHNYHFHTGPVNNQVIEQHYNHHNHV 130


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 325 CAWRCLLRLSPVLSRKQEDKNTRKLD*SRNAQSYQRLSN*IM 450
           C    +L L  V+  ++ DKN ++L    NAQ +QR++  ++
Sbjct: 223 CVLFPILSLLLVIEIRKADKNQKRLTAPTNAQDFQRITRLVL 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,522
Number of Sequences: 27780
Number of extensions: 301752
Number of successful extensions: 665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)