Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5053
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   2.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.9  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   6.7  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   6.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   6.7  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   8.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 394 LQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 543
           +QI  E  +F  S+   I  T +   VP GP++ + IR  +I  + P RL
Sbjct: 209 VQIQQECTKFGKSSR--IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRL 256


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 274  LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 423
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 292 TNARTRRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 465
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 451 ETGLVASVPDGPELYNPIRSSDIMKSQ 531
           E+GL+A+  + PE+   I S D +K Q
Sbjct: 488 ESGLLATFIEAPEMIPSISSPDFVKEQ 514


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 256 RVSRDE-LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPE--YLQIDTEELRFR 426
           R+S  E +RF+  T ARTR  G   Q F+N    +Q  I   V+ E  ++Q D  +  F 
Sbjct: 511 RISDPESIRFYSSTTARTRSAG---QPFDNE---VQTYIDTDVSSENPFIQFDHIDSSFV 564

Query: 427 NSATCIIDETGLVAS 471
             AT I  +T ++ S
Sbjct: 565 QLATYI--DTSMIPS 577


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 287 SKKRNSSRDTREQNVFGFVVSRMLACSCVNAV 192
           S+K+N S D++   +F F+      CS  NA+
Sbjct: 53  SRKKNKSTDSKSPTLFAFITFEN-KCSADNAI 83


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +2

Query: 158 RRFHKRHATRYTQRLRNYKQAF*TPQTRTRFVRVCRATNCVFST*PTPERVEVVLAINYL 337
           R F  R A RY      Y  +       T  V V   T C+ S+ P  +R+   ++I + 
Sbjct: 34  RDFQSRFADRYNPVTDTYSYSSARQGLITGMVNVGSMTGCILSS-PLMDRIGKRVSIMFW 92

Query: 338 TI 343
           TI
Sbjct: 93  TI 94


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -1

Query: 263 DTREQNVFGF--VVSRMLACSCVNAVY 189
           +T   NVF +   V R+L C CV  VY
Sbjct: 261 NTEAVNVFYYDPTVERILTCDCVRPVY 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,774
Number of Sequences: 5004
Number of extensions: 49901
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)