Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5053
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 32 0.32
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612... 30 1.7
07_03_0946 - 22798055-22798742,22799746-22799810 29 3.0
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 5.2
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457... 28 5.2
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 5.2
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 28 5.2
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 28 6.9
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 28 6.9
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 9.2
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = +1
Query: 130 TLYATI*NIPKVSQAARNALYTAFTQLQASILDTTNPNTFCSRVSRDELRFFDVTNARTR 309
T AT+ + V QA NA+Y AF Q + T NP+ + L F VT R
Sbjct: 242 TFQATMRTVTNVGQA--NAVYKAFLQPPTGVEMTVNPSVLVFSKEKKVLS-FKVTFKAMR 298
Query: 310 RGGVGDQLFNN 342
R GD +F +
Sbjct: 299 RPIQGDYIFGS 309
>09_02_0235 +
6122145-6122206,6122408-6122417,6123515-6123549,
6124422-6124842,6124978-6125412
Length = 320
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 248 FVRVCRATNCVFST*PTPERVEVVLAIN 331
FV V ++TNC+ P PE ++ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246
>07_03_0946 - 22798055-22798742,22799746-22799810
Length = 250
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 174 GTQRVIHSVYATTSKHSRHHKPEHVLFACVARRIAFFRRDQRPNASRWCWRSI 332
G I + + ++HS+H + E C A +A F + + RW WR++
Sbjct: 52 GRDDSIKGIPSLAARHSQHRRLE---VGCRASSLASFSYPELTSKPRWWWRTV 101
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -3
Query: 489 LGAVGHRRHQTRFVNYTRGAISKSQFLRV 403
+G GH + +F+ + G +KS+F ++
Sbjct: 297 IGKSGHHKEMWKFIQFIEGTFTKSEFTKI 325
>07_01_0618 +
4577417-4577430,4577838-4577874,4578070-4578173,
4578512-4578707,4579559-4579628,4579849-4579952,
4580296-4580335,4581016-4581070,4581418-4581426,
4582026-4582157,4582544-4582613,4583029-4583086,
4583173-4583228,4583315-4583470,4583589-4583700,
4583782-4583923,4584141-4584216,4584306-4584401,
4584509-4584637
Length = 551
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 462 QTRFVNYTRGAISKSQFLRVDLQVLGR 382
Q RF+NY ++ QFL++ Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 397 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 543
QI E ++F S+ I T L P GP+L + R D++ + P RL
Sbjct: 237 QILEEAVKFGRSSR--ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRL 283
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 397 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 543
QI E +F S+ I L P GP+L + R +DI+ + P RL
Sbjct: 267 QIQDEAKKFGRSSR--ISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 313
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 503 IGLYNSGPSGTDATRPVSSIIHV 435
+GLYN GPS D P+S+ V
Sbjct: 81 LGLYNDGPSRNDTQSPLSNFFGV 103
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 290 TSKKRNSSRDTREQNVFGFVVSRML 216
+S R SRD R +N+FGF VS +L
Sbjct: 18 SSTTRFMSRDIRAKNIFGFSVSLIL 42
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +1
Query: 244 TFCSRVSRDELRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQID-TEELR 420
T+C L+ T RT R +G+QL N ++ +L+ + E L D E
Sbjct: 819 TYCYTTMPFGLKNAGPTFQRTTRISLGNQLGRNVEAYVDDLVVKTRNQEMLLSDLAETFE 878
Query: 421 FRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRLQ 546
SA ++ V VP G +L + S+ +++ P +++
Sbjct: 879 SLRSARIKLNPDKCVFGVPAG-KLLGFLVSARGIEANPEKIR 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,087,773
Number of Sequences: 37544
Number of extensions: 327822
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -