Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5053
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.88 
U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine re...    28   4.7  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical...    28   6.2  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    28   6.2  

>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 388 EYLQIDTEELRFRNSATCIIDETGLVASVPDGPE 489
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical
           protein C14F11.1a protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 388 EYLQIDTEELRFRNSATCIIDETGLVASVPDGPE 489
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein28 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 238 GLWCLECLLVVA*TLCITRCVPLVKPSV 155
           GLWC  C  ++A +L + R + L KP +
Sbjct: 117 GLWCCSC--IIAMSLVVNRLLDLTKPRI 142


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 385 PEYLQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRLQI 549
           P    I TEE       TC+ D  G    +    E Y  + S D + S+P  L I
Sbjct: 293 PVTYAIGTEEKNGSKVTTCLFDPNGTGGRLWSDLEAYGHLSSYDHLPSKPKELGI 347


>AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical
           protein C04E12.12 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 549 NLQTIGLTFHDVTASYRVVQLGAVGHRRHQTRFVNYT 439
           N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 42  NIKILGLAHTSWTDTERVRKVNAEGKEAYETKIVNYS 78


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 549 NLQTIGLTFHDVTASYRVVQLGAVGHRRHQTRFVNYT 439
           N++ +GL     T + RV ++ A G   ++T+ VNY+
Sbjct: 42  NIKILGLAHTSWTDTERVRKVNAEGKETYETKIVNYS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,293
Number of Sequences: 27780
Number of extensions: 293735
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)