Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5053
(623 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 23 3.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 4.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 22 4.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +3
Query: 261 VARRIAFFRRDQRPNASRWCWRSI 332
V R+A++R D N W W +
Sbjct: 192 VEHRVAYWREDIGINLHHWHWHLV 215
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 206 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 290 TSKKRNSSRDTREQNVF 240
T++KRNS REQN +
Sbjct: 33 TNRKRNSRSREREQNSY 49
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 290 TSKKRNSSRDTREQNVF 240
T++KRNS REQN +
Sbjct: 33 TNRKRNSRSREREQNSY 49
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 274 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 527 LFMMSLLLIGLYNSGPSGTDATRPVSSIIHVALFLNL 417
+ + S+ L+G SG T V+ ++ + +FLNL
Sbjct: 274 VLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,801
Number of Sequences: 438
Number of extensions: 3849
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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