Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5052
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    31   0.099
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   4.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   4.9  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   6.5  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.6  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 30.7 bits (66), Expect = 0.099
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -3

Query: 168 DDIHIKQEPLDDYS---MEQHEGLMIKQEPPD-ETKYNPDLSMY*PPYTQRNVH 19
           DD HI  +  +DYS   + QHE  + KQ+PP  +  Y     +  P     NVH
Sbjct: 495 DDYHICTQIPEDYSPKFLSQHESFVYKQQPPSTDDLYGTMKKLKIPFSIPTNVH 548


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 79  DQVQPGSVHVLTPIHPEKCTCTAL 8
           +Q+QP S  V     P++CT TAL
Sbjct: 241 EQLQPDSWPVANDRRPQRCTGTAL 264


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 23  TFLWVYGGQYMDRSG 67
           TF W+ GG+Y+  SG
Sbjct: 576 TFRWISGGEYIQMSG 590


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 34  GVWGSIHGQIRVVLGLIRRF 93
           GV+GSI+G    +L LI +F
Sbjct: 463 GVYGSIYGVAMTILALIAQF 482


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 46  SIHGQIRVVLGLIRRFLLDHQPFVLFHRVVVERLLFDVYVVG 171
           ++ G + ++LG+I    L    F+ F  +   R +FD  + G
Sbjct: 59  ALSGLVFLILGMIYTISLLQSNFLFFSGITPIRAIFDFILTG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,104,591
Number of Sequences: 5004
Number of extensions: 14671
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)