Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5052
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0062 - 13044020-13044417,13044614-13044749                       28   3.6  
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133...    28   3.6  
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571     28   3.6  
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634     27   6.3  
04_03_0771 + 19434460-19434987                                         27   8.3  
04_01_0166 - 1861750-1862181,1862317-1863873                           27   8.3  

>11_04_0062 - 13044020-13044417,13044614-13044749
          Length = 177

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 73  VQPGSVHVLTPIHPEKCTCTALI 5
           V+P S   + PIH  KC CT +I
Sbjct: 146 VEPSSDEEVKPIHVVKCPCTGVI 168


>02_01_0198 +
           1334563-1334994,1335872-1335919,1336096-1336351,
           1336733-1336881,1336969-1337097,1337425-1337592,
           1338416-1338610
          Length = 458

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 61  IRVVLGLIRRFLLDHQPFVLFHR 129
           ++ VLG++R+FL+DH    LF R
Sbjct: 272 LKSVLGVLRKFLVDHGVLHLFER 294


>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
          Length = 498

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 145 AARRLLDGTARRADDQARTSG*DQVQPGSVHVLTPIHP 32
           AA RLL+    RA      S   +  P   H L P HP
Sbjct: 411 AASRLLEAETARARSDVGASSYGREAPSRYHALRPYHP 448


>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
          Length = 846

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 64  RVVLGLIRRFLLDHQPFVLFHRVVVERLL-FDVYVVGLELVF 186
           ++V   ++ ++LDH P V +  + + RLL F   VV L  V+
Sbjct: 144 KIVAEWLKHYILDHGPIVAYATLQLFRLLVFTTIVVPLVFVY 185


>04_03_0771 + 19434460-19434987
          Length = 175

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 414 EHGEDRGRQGGTPREH 367
           EHG  RGR GG  R H
Sbjct: 84  EHGHHRGRAGGEARRH 99


>04_01_0166 - 1861750-1862181,1862317-1863873
          Length = 662

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 166 RHTHQTGAARRLLDGTARRADDQARTSG 83
           RH H T    ++L+G ARR    A T G
Sbjct: 352 RHHHGTARLAKMLEGFARRLPAAAATDG 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,554
Number of Sequences: 37544
Number of extensions: 116872
Number of successful extensions: 437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)