Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5052
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 30 0.80
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 30 0.80
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 27 4.3
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81457-2|CAB03814.1| 191|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical pr... 26 9.8
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 26 9.8
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 26 9.8
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 26 9.8
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 421 PPGTRGGQGETGRHAQ 374
PPGTRG QGE GR Q
Sbjct: 148 PPGTRGPQGEVGRPGQ 163
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 421 PPGTRGGQGETGRHAQ 374
PPGTRG QGE GR Q
Sbjct: 148 PPGTRGPQGEVGRPGQ 163
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 126 MEQHEGLMIKQEPPDETKYNPDLSM 52
++++E + +K+EP DE +PD+S+
Sbjct: 144 IQKYEEVSVKEEPSDEGNEDPDMSV 168
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 126 MEQHEGLMIKQEPPDETKYNPDLSM 52
++++E + +K+EP DE +PD+S+
Sbjct: 144 IQKYEEVSVKEEPSDEGNEDPDMSV 168
>Z81457-2|CAB03814.1| 191|Caenorhabditis elegans Hypothetical
protein C01G12.3 protein.
Length = 191
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 168 DDIHIKQEPLDDYSMEQHEGLMIKQEPP 85
DD+ I E +DDYS+ + +QEPP
Sbjct: 71 DDVEIPDEWVDDYSVPVAPVVHKEQEPP 98
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
protein K04B12.1 protein.
Length = 1764
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 24 HFSGCMGVNTWTDPGCTWSHPEVLA*SSALRAVPSSS 134
H S C DP C W HP +SA P +S
Sbjct: 447 HHSSCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTS 483
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 421 PPGTRGGQGETGRHAQ 374
PPG GGQGE G+ +
Sbjct: 240 PPGDNGGQGEPGKDGE 255
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 421 PPGTRGGQGETGRHAQ 374
PPG GGQGE G+ +
Sbjct: 240 PPGDNGGQGEPGKDGE 255
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 96 QEPPDETKYNPDLSMY*PPYTQRNVHVQL 10
+ PP +T ++ L Y PPYT+ V V +
Sbjct: 29 EPPPSKTCFDVTLKTYGPPYTEYIVTVAI 57
>Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical
protein F28C6.2 protein.
Length = 535
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 83 MRPSTTRICPCIDPHTPREMYMY 15
M PS +CP I P P+ +Y Y
Sbjct: 513 MPPSQMNLCPPITPIPPQNVYYY 535
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 180 KLKPDDIHIKQEPLDDY 130
K +P D +K+EPLDDY
Sbjct: 600 KEEPKDEGVKEEPLDDY 616
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 421 PPGTRGGQGETGRHAQG 371
PPG RG GETG +G
Sbjct: 221 PPGPRGPPGETGDEGEG 237
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 24 HFSGCMGVNTWTDPGCTWSHPEVLA*SSALRAVPSSS 134
H S C DP C W HP +SA P +S
Sbjct: 449 HHSSCTECLVSVDPLCQWCHPTQSCTTSARCTSPVTS 485
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,390,959
Number of Sequences: 27780
Number of extensions: 87612
Number of successful extensions: 363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -