Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5050
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.64 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.64 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.64 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.64 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 380 SSIHPIWRLAPESSPLQTQVLIVSLAPRSERDSDG 276
           S +   W+  PE+  L+  +++  + PRS +DS+G
Sbjct: 13  SIVDAAWKPLPEN--LKEDLIVYQVYPRSFKDSNG 45


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 481 RLQGYSLELRRHDKGVLLRSERANLCL*RVELNQVQFTPFGDSPQR--VLHFR 329
           +L+G    +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 354 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 406


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 380 SSIHPIWRLAPESSPLQTQVLIVSLAPRSERDSDG 276
           S +   W+  PE+  L+  +++  + PRS +DS+G
Sbjct: 13  SIVDAAWKPLPEN--LKEDLIVYQVYPRSFKDSNG 45


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 481 RLQGYSLELRRHDKGVLLRSERANLCL*RVELNQVQFTPFGDSPQR--VLHFR 329
           +L+G    +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 444 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 496


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 305 QERRSKLVSEVENSLGRVSKW 367
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 320 LIVSLAPRSERDSDG 276
           L+  + PRS +DSDG
Sbjct: 31  LVYQIYPRSFQDSDG 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,496
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)