Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5049
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   106   1e-24
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    29   0.13 
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    29   0.18 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   0.31 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   1.3  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   1.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   1.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   2.9  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   3.8  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      24   5.1  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    24   6.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    24   6.7  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    23   8.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    23   8.8  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    23   8.8  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  106 bits (254), Expect = 1e-24
 Identities = 52/91 (57%), Positives = 66/91 (72%)
 Frame = +3

Query: 48  NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 227
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 228 GKRRKGTVCIVLSDDNCPDEKIRMNRGGRNN 320
           GKRRK TV IVL+D+   D   R+NR  RNN
Sbjct: 81  GKRRKDTVLIVLTDEEMEDGVARINRVVRNN 111


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 22  FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 195
           F+++N K   KW++  A+    P  S + + PT+S   + + SA TT     +RP  S  
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342

Query: 196 NSSVVTQSCSRANAAREPFASCS 264
            S  +    +  +AA   F+  S
Sbjct: 343 RSPPINFDGTSYDAAGNVFSPSS 365


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.18
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 69  SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 242
           S +D+S  + RR     R + + A S D++  V A S       +L  G+T+       K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302

Query: 243 GTVCIVLSD 269
             VC+ L+D
Sbjct: 303 AAVCVALND 311


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.31
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 73  LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 186
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 94  SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 237
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 72  PD-DLSTAILRRKDRPNRLIVEEAVSD 149
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 45  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 203
           L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 132 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 230
           E+AV D+N+ ++L+  +  +    RGD  ++ G
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVG 279


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 297 SEFSHQG--NYRLRARCKRFPCGVCP 226
           S F+ +G  ++  R  C+ F CG+CP
Sbjct: 18  SNFTSRGLVHFTDRKVCRSFLCGICP 43


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 105 CDGGSRSINHQGFYY 61
           CD  S+++ H GFYY
Sbjct: 285 CDTCSQNLEHVGFYY 299


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 87  TAILRRKDRPNRLIVEEA--VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKGTVCIV 260
           ++ L +++    +++ EA  +S+DN        K+E  +LF  DT    G +    + I+
Sbjct: 22  SSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLEDAELFMFDTGSADGAKDSVPLDII 81

Query: 261 LSDDNCPDEKIRMN 302
             D+   +++   N
Sbjct: 82  AGDNTVKEDEEASN 95


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 160  SWHFHRPKWSNFNSSVVTQSCSRANAAREPFASCSQTII 276
            S HF   +W      V     SR+ + R    SC Q I+
Sbjct: 1252 SEHFQDTRWKIIYDHVCKLCLSRSRSLRAASLSCLQRIV 1290


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/74 (21%), Positives = 32/74 (43%)
 Frame = +3

Query: 78  DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKGTVCI 257
           D++   +   DRP    + + V D   ++A  + K+E+ +  +      K ++ K  V  
Sbjct: 625 DMAALGVSFNDRPQGSALVKLV-DAEELIAAREQKLEEERAKQAKKAQAKAEQEKKQVER 683

Query: 258 VLSDDNCPDEKIRM 299
           V+     P E  +M
Sbjct: 684 VMKGKTSPSEMFKM 697


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +1

Query: 49  IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFN 198
           ++ ++I+ L I        R     SLSK Q+ +   +W  +  +W   N
Sbjct: 198 LRTRVIQLLAIAPETEDFLRLRTKASLSKLQALLPEVAWKNNMNQWELLN 247


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 120 GWVCPCDGGSRSIN 79
           GW CPC G    I+
Sbjct: 188 GWFCPCHGSHYDIS 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,205
Number of Sequences: 5004
Number of extensions: 22913
Number of successful extensions: 83
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)