Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5049
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.54 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   6.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   8.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = -1

Query: 299 HPNFLIRAIIV*EHDANGSLAAFALEQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNET 120
           H    + A IV    ++  L        CV+ E L +    L  CH  VV   C  +   
Sbjct: 273 HARRKVLAGIVQTKGSDAELICVTTGTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLY 332

Query: 119 VGSVLATEDR 90
               L TEDR
Sbjct: 333 KQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 70 LLLSAILFKIYC*NLRTIIIFIT 2
          +LLS+  F++    L TI+IF+T
Sbjct: 1  MLLSSAWFEVIAAVLLTILIFVT 23


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 89  GR*IIRAFIICHFIQNLLLESKNY 18
           G  +++  IIC  + N+  ++K+Y
Sbjct: 88  GAILVQVAIICEGVMNIQKDNKSY 111


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 EQLQLFRGDTVLLKGK 233
           +QL  +RG+ V LKG+
Sbjct: 506 QQLNKYRGNGVSLKGE 521


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 109 SLRRRIAVDKS 77
           ++RRR+AVD+S
Sbjct: 473 TVRRRVAVDRS 483


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 313 LPPRFIRIFSSGQLSSESTMQTV 245
           +PP    +FSSG +S   +++ V
Sbjct: 144 IPPTTCLVFSSGSVSCVPSVKHV 166


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 240 KGTVCIVLSDDNCPDEKI 293
           +G  CI++  +   DEKI
Sbjct: 120 RGYKCIIVMPEKMSDEKI 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,099
Number of Sequences: 438
Number of extensions: 1639
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)