Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5047
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0405 - 8597807-8598045,8599218-8599284,8599571-8599636,859...    29   2.7  
02_04_0139 + 20151733-20152125                                         28   6.2  
05_02_0109 + 6689176-6689315,6689438-6689561                           28   8.2  
01_01_0804 + 6256915-6257024,6257141-6257264                           28   8.2  

>09_02_0405 -
           8597807-8598045,8599218-8599284,8599571-8599636,
           8599731-8599795,8600514-8600872,8601118-8601125,
           8601567-8601656,8601770-8601962,8603518-8603608,
           8603948-8604080,8605340-8605480,8605601-8605662,
           8605743-8605830,8606107-8606536,8606651-8606757
          Length = 712

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 CLDMGGLALSPPGVKWLLEPIDIYNVNVPPTL 223
           CL+M GL L P  +   LEP D Y+V +PP L
Sbjct: 617 CLNMMGLLL-PTKIILRLEPGDRYSVELPPEL 647


>02_04_0139 + 20151733-20152125
          Length = 130

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 371 YNKLCLDSENYCGSTMLYFYVFIYLGNSPKQTICYK*ANKQTPHGVRC 514
           +N L  D  N CG  M YF +  Y G  P  TI  K    + P+G++C
Sbjct: 87  HNTLLNDLNNGCGDDMFYF-IHTY-GRLPPGTIFKKCV--EGPYGMKC 130


>05_02_0109 + 6689176-6689315,6689438-6689561
          Length = 87

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 333 GLQEVLLPVIMQIIINYVWIVRITVAVLCFIFMCL 437
           GL   LL V++ I+   +WI+ + ++ +C   +C+
Sbjct: 26  GLPFALLAVLVSIVGAIIWIIGLPISCICPCCLCV 60


>01_01_0804 + 6256915-6257024,6257141-6257264
          Length = 77

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 333 GLQEVLLPVIMQIIINYVWIVRITVAVLCFIFMCLFI 443
           GL   LL V++  I   +WIV + ++ +C   +C+ +
Sbjct: 16  GLPFALLAVVVSFIGAIIWIVGLPISCICPCCLCVTV 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,205
Number of Sequences: 37544
Number of extensions: 373197
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)