Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5047
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AC024867-2|AAK68602.2|  166|Caenorhabditis elegans Hypothetical ...    30   1.4  
U97012-6|AAK39147.1|  337|Caenorhabditis elegans Serpentine rece...    29   2.4  
Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    29   3.2  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    29   3.2  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    29   4.2  
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        28   5.6  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    28   5.6  
Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin ...    28   7.4  
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z82051-2|CAB04816.1|  237|Caenorhabditis elegans Hypothetical
           protein T23D5.3 protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +3

Query: 372 IINYVWIVRITVAVLCFIFMCLFIWETAQN 461
           +INY W+V +T+++   +++ LF+  TA++
Sbjct: 16  LINYFWLVLVTISLRMIVWIMLFLTMTAES 45


>AC024867-2|AAK68602.2|  166|Caenorhabditis elegans Hypothetical
           protein Y74C10AR.2 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 432 CLFIWETAQNKQYVTNRQT-NKLHMVSAVNIRYDC 533
           C   WE  +  Q+V N +T ++++  +AV  RY C
Sbjct: 71  CFASWEQDEKSQFVKNEETIDRMYKNNAVGFRYKC 105


>U97012-6|AAK39147.1|  337|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 15 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 535 LQSYLMLTADTMWSLFVCLFVTYCLFWAVSQINKHI 428
           L  Y+     ++WSLF+     Y + + VS   KHI
Sbjct: 98  LSMYIHTLTHSLWSLFISFVFRYLILYKVSLKEKHI 133


>Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical
           protein ZC455.7 protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +3

Query: 372 IINYVWIVRITVAVLCFIFMCLFIWETAQNKQYVTNRQTNKLHMVSAVNIRYDCRKNKET 551
           I+ Y+    +   ++       F++    NK+ +   +T    +   +++RY  R+N +T
Sbjct: 143 ILRYI-SAAVLAGIIAISSFLTFLYNCRINKRTLHFVETRNRDIKFDLSVRYQLRENVKT 201

Query: 552 FHMIHLLGLKL 584
           F M++ L L L
Sbjct: 202 FKMLNFLLLML 212


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 107 FFIIFFYCL--DMGGLALSPPGVKWLLEPIDIYNVNVPPTLRYKLQGLNIQQLPCLSNRN 280
           FF++FF+C+   +  L LS     W +  +D +NV+VP  L   +  +    +       
Sbjct: 221 FFVLFFHCIFTFVQTLGLSNYACGW-INALDTFNVSVPIALLMLISAITF-TVALTGMVT 278

Query: 281 ALLLYGRNRQGAG 319
           AL+   R  +GAG
Sbjct: 279 ALVKVHRLYRGAG 291


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 107 FFIIFFYCL--DMGGLALSPPGVKWLLEPIDIYNVNVPPTLRYKLQGLNIQQLPCLSNRN 280
           FF++FF+C+   +  L LS     W +  +D +NV+VP  L   +  +    +       
Sbjct: 221 FFVLFFHCIFTFVQTLGLSNYACGW-INALDTFNVSVPIALLMLISAITF-TVALTGMVT 278

Query: 281 ALLLYGRNRQGAG 319
           AL+   R  +GAG
Sbjct: 279 ALVKVHRLYRGAG 291


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 1 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 351 LPVIMQIIINYVWIVRITVAVLCFIFMCLFIWET 452
           LP I    +     V I V + C IF+ LF+W+T
Sbjct: 769 LPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDT 802


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 477 NRQTNKLHMVSAVNIRYDCRKNKETFHMIHLLGLKLY 587
           +++T     V+A  + Y+C K+KE    +  LGLK Y
Sbjct: 392 DKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKY 428


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 477 NRQTNKLHMVSAVNIRYDCRKNKETFHMIHLLGLKLY 587
           +++T     V+A  + Y+C K+KE    +  LGLK Y
Sbjct: 387 DKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKY 423


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 477 NRQTNKLHMVSAVNIRYDCRKNKETFHMIHLLGLKLY 587
           +++T     V+A  + Y+C K+KE    +  LGLK Y
Sbjct: 392 DKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKY 428


>Z78537-2|CAB01720.2|  604|Caenorhabditis elegans Hypothetical
           protein C09F12.2 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 405 VAVLCFIFMCLFIWETAQNKQYVTNRQTNKLHMVSAVNIRYDCRKNKETFHMIHLLGLKL 584
           V ++  I  CL+I       +Y     T +L   ++  IR D  KN+    M HL+GL +
Sbjct: 125 VTIISIILHCLWIIAIINALRY-----TWRLRRFASHEIRLDLVKNEAGLKMKHLVGLCV 179

Query: 585 Y 587
           Y
Sbjct: 180 Y 180


>AF038618-7|AAB92070.2|  227|Caenorhabditis elegans Syaptophysin
           protein 1 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 405 VAVLCFIFMCLFIWE 449
           V VLCF F C FIW+
Sbjct: 199 VCVLCFAFNCWFIWK 213


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -2

Query: 566 MNHVECFFVLSTIISDVD-SGHHVEFVCLPICN 471
           M H  CF   +  IS    S HH  F C P CN
Sbjct: 1   MTHFSCFPAFTLPISSYSPSLHHFFFQCTPGCN 33


>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +3

Query: 354 PVIMQIIINYVWIVRITVA-VLCFIFMCLFIW 446
           P+++ II+    I+ +TVA +LCF++ C+++W
Sbjct: 109 PLLLGIILT---IIVVTVALILCFVY-CIYLW 136


>U41272-7|AAY86277.1|  240|Caenorhabditis elegans Hypothetical
           protein T03G11.9 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 496 SLFVCLFVTYCLFWAVSQINKHIKI 422
           +L VCLF T C+F+ V  +N  + I
Sbjct: 106 ALVVCLFSTICMFFGVYTVNLWLDI 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,295
Number of Sequences: 27780
Number of extensions: 344079
Number of successful extensions: 857
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)