Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5046
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    29   3.2  
AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      27   9.6  

>Z81463-8|CAB03849.2|  346|Caenorhabditis elegans Hypothetical
           protein C06B8.6 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 674 MNTYCGITIIVATVFVKS*YIILFYHQ*F---SQGTRCEEYFRYFFYTLGYVIGVLVRTP 504
           +NT   +  I+ATV      I+  Y   F   S+     +Y R  +YT+ Y I VL+  P
Sbjct: 102 INTEYQVMFIMATVEAMCVSILCLYENRFFILSRNLYWWKYARIPWYTMNYTIAVLMFLP 161

Query: 503 NFFQ 492
            F+Q
Sbjct: 162 VFYQ 165


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 1   ISEPRLTRD-MPQCIYNF*VHYVILQ 75
           +SE   TRD M +CIYN   HY++L+
Sbjct: 495 VSEATNTRDAMAKCIYNSLFHYIVLR 520


>AL023856-2|CAA19567.1|  327|Caenorhabditis elegans Hypothetical
           protein Y94A7B.5 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -2

Query: 656 ITIIVATVF--VKS*YIILFYHQ*FSQGTRCEE--YFRYFFYTLGYVIGVLVRTPNF 498
           + ++++T+F  V    I++F ++ F    R +   Y RY F  + Y+IG+ V  P +
Sbjct: 94  LVLVISTIFMLVPISIILMFENRYFILFVRNDSWRYLRYPFLIINYIIGITVCIPAY 150


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 140 NVWW*DGVIFISSSNPRRMNFWHTQRNPMLLC 235
           +V W      +SS   R +  WH  RN  L C
Sbjct: 722 DVSWSKNYFILSSGMDRTVKLWHLSRNECLCC 753


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 140 NVWW*DGVIFISSSNPRRMNFWHTQRNPMLLC 235
           +V W      +SS   R +  WH  RN  L C
Sbjct: 722 DVSWSKNYFILSSGMDRTVKLWHLSRNECLCC 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,827,014
Number of Sequences: 27780
Number of extensions: 335856
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)