Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5044
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 31 0.51
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 30 0.89
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 29 2.1
AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical... 29 2.1
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical pr... 27 4.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 4.8
U39666-3|AAA80410.2| 178|Caenorhabditis elegans Hypothetical pr... 27 4.8
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 27 4.8
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 27 8.3
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 27 8.3
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 27 8.3
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 27 8.3
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 27 8.3
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 27 8.3
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 30.7 bits (66), Expect = 0.51
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 292 ELVYSLWMFMIGQPPPFLARLILYSLFMP 206
E + +W F+ G PPPF +++ F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 29.9 bits (64), Expect = 0.89
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTT-CPTK*SELWSHPT 204
T++P T K T TS+PTS + T A ++ + TT CPTK HPT
Sbjct: 181 TSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPTTTDCPTKVCRYGFHPT 236
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.1 bits (62), Expect = 1.6
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 216
T +P TT T T++PT+ APT T++ T TT T + + PT T
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTT--TPTTTTTVPTTTTTTPTTTTT 229
Query: 217 TNT 225
T T
Sbjct: 230 TTT 232
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 216
T +P TT T T++PT+ PT T+ + T TT PT ++ + PT T
Sbjct: 221 TTTPTTTT----TTTTTPTTTTTTPTTTTTPATTT--SETTTTTPTTTTQTTTKPTTTTT 274
Query: 217 TNT 225
T T
Sbjct: 275 TPT 277
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPTK*SELWSHPTWA* 213
T +P TT T T++PT+ PT T++ + T TT PT + + T
Sbjct: 151 TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTP 210
Query: 214 TTNT 225
TT T
Sbjct: 211 TTTT 214
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSS-SLNTLLGGKKTTCPTK*SELWSHPTWA* 213
T +P TT T T++PT+ PT T++ + T TT PT + + T
Sbjct: 158 TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVP 217
Query: 214 TTNT 225
TT T
Sbjct: 218 TTTT 221
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 188 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 36
NS YFVGH F F +S ++++A V A + G+ V + +V N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 188 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 36
NS YFVGH F F +S ++++A V A + G+ V + +V N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 188 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAV 36
NS YFVGH F F +S ++++A V A + G+ V + +V N E++
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESL 1529
>AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical
protein F56D6.15 protein.
Length = 395
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 162
K + C+ PT P A PT T++++N LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
protein F37A4.4 protein.
Length = 1163
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 310 FTNDSNELVYSLWMFMIGQPPPFLARLILYSLFMPT*DGSTILITS 173
FT++ +L+++ G+ + R YSLFM DG +LI S
Sbjct: 787 FTSNGRNQYINLYLYYFGKTSDYEKRW-RYSLFMDRVDGKNVLIDS 831
>Z83113-2|CAB05544.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.4 protein.
Length = 479
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = -2
Query: 308 HKRLERVGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFFPPKSVLSE 129
HK V A D+ + + N V HVG+ + D+F H+ F + +
Sbjct: 195 HKPAAHRSVAAFDLGGGSTQLTYWPNNEA-VFSEHVGYERDIDFFGHHIRLFTHSFLGNG 253
Query: 128 ELVAPVGACGFEVGDEVHVHHLLV 57
+ A + E +E+ H L+
Sbjct: 254 LIAARLNILQLETDNEIESTHQLI 277
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +1
Query: 37 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPT 204
T SP +T+ T TS P+S+P T + SSS T + TT K S L S T
Sbjct: 1978 TPSPSQSTES--TQTSLPSSSPSPSTHSVSSSEGTTMSSGATTSGDKMSFLSSTGT 2031
>U39666-3|AAA80410.2| 178|Caenorhabditis elegans Hypothetical
protein K04E7.1 protein.
Length = 178
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 245 LFSQTNSVFVVHAHVGWLHNSDYFVGHVVFFPPKSVLSEELVAPVGACG 99
L++ + V+V ++ WLH S G+V FP + L LV CG
Sbjct: 45 LYAVSFVVYVTNSICSWLHISFVVKGYVTSFPLNTWLVVSLVV-TAVCG 92
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 156 EDYVPHEVIRIVEPSYVGMNN 218
+D + EV+R+ +PSY+G +N
Sbjct: 268 DDEIEPEVVRLFDPSYIGNDN 288
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 79 TSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHP 201
TSSPTS+ + P T +L T G + PT +W++P
Sbjct: 724 TSSPTSSNNVPKSDTDYTLTT---GSEGPTPTS-EHIWTNP 760
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 292 ELVYSLWMFMIGQPPPFLARLILYSLFMP 206
E V +W F PPPF +++ F+P
Sbjct: 179 EHVIEIWEFFADSPPPFSKCVMILMYFVP 207
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 12 ETWTRFVEDSFPIVNDQEVMDVYL 83
ETW D F IVND+EV D +
Sbjct: 392 ETWISKSLDRFRIVNDKEVRDALI 415
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 12 ETWTRFVEDSFPIVNDQEVMDVYL 83
ETW D F IVND+EV D +
Sbjct: 392 ETWISKSLDRFRIVNDKEVRDALI 415
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
protein T24B8.7b protein.
Length = 2923
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 12 ETWTRFVEDSFPIVNDQEVMDVYL 83
ETW D F IVND+EV D +
Sbjct: 392 ETWISKSLDRFRIVNDKEVRDALI 415
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
protein T24B8.7a protein.
Length = 2920
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 12 ETWTRFVEDSFPIVNDQEVMDVYL 83
ETW D F IVND+EV D +
Sbjct: 392 ETWISKSLDRFRIVNDKEVRDALI 415
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 30 VEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG 209
+ D + +V +QE + +VANL +C K+ W ++ + IVEP+
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNRQQCAKY-------WPDEQITRYGDIIVEPASFS 923
Query: 210 MNNEYRI 230
+++Y I
Sbjct: 924 FHSDYAI 930
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 30 VEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG 209
+ D + +V +QE + +VANL +C K+ W ++ + IVEP+
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNRQQCAKY-------WPDEQITRYGDIIVEPASFS 923
Query: 210 MNNEYRI 230
+++Y I
Sbjct: 924 FHSDYAI 930
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 30 VEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG 209
+ D + +V +QE + +VANL +C K+ W ++ + IVEP+
Sbjct: 906 IGDFWRMVWEQESYLIVMVANLTEKNRQQCAKY-------WPDEQITRYGDIIVEPASFS 958
Query: 210 MNNEYRI 230
+++Y I
Sbjct: 959 FHSDYAI 965
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 30 VEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG 209
+ D + +V +QE + +VANL +C K+ W ++ + IVEP+
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNRQQCAKY-------WPDEQITRYGDIIVEPASFS 923
Query: 210 MNNEYRI 230
+++Y I
Sbjct: 924 FHSDYAI 930
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 30 VEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVG 209
+ D + +V +QE + +VANL +C K+ W ++ + IVEP+
Sbjct: 871 IGDFWRMVWEQESYLIVMVANLTEKNRQQCAKY-------WPDEQITRYGDIIVEPASFS 923
Query: 210 MNNEYRI 230
+++Y I
Sbjct: 924 FHSDYAI 930
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,387
Number of Sequences: 27780
Number of extensions: 228717
Number of successful extensions: 693
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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