Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5043
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   0.14 
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    28   0.97 
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   9.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.0  

>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect(2) = 0.14
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 324 KKHNFKKNCLGFLKYHNLTTHLGKLNSNR 410
           + +N  K+  G  +Y ++ THLG+  S R
Sbjct: 173 RPYNEHKSLSGTARYMSINTHLGREQSRR 201



 Score = 24.6 bits (51), Expect(2) = 0.14
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 219 YCNERFSGQLHSVNFVSRCARIVKFHSHKFFITRLKKHNF 338
           YC  RFS +  ++       RI   H   F    +K  NF
Sbjct: 101 YCGRRFSPKTVAMIAKQMITRIQSVHERHFIYRDIKPDNF 140


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 282 IVKFHSHKFFITRLKKHNF----KKNCLGFLKYHNLTTHLGKLNSNR 410
           +V F   KF+   + K +     KKN  G  +Y ++ THLG+  S R
Sbjct: 152 VVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRR 198


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -3

Query: 199 SLNIAAGELSRMYTRKKM 146
           S+++AAG +++MYT K+M
Sbjct: 404 SISVAAGIVAQMYTSKRM 421


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 261 FVSRCARIVKFHSHKFFITRLKKHNFKKNCLGFLKYHNLTTH 386
           FV +  RI K     F  TRLKK  + K  L   KYH L  H
Sbjct: 459 FVEKLLRISK-SVQSFRGTRLKKIEYLKVLLEDHKYHLLDFH 499


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 499 PLSNPNNTRSYLDALKQSPFQRSTLTPT 416
           PLS+  +    LD   QSPF  ++ +PT
Sbjct: 25  PLSSYTSISRELDYANQSPFSSNSFSPT 52


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 315 TRLKKHNFKKNCLGFLKYHNLTTHLGKLNSN 407
           T L    F K+ L FL   NLT+ L KLN++
Sbjct: 355 TYLTAAQFFKSMLQFLSSKNLTSTLFKLNAD 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,528
Number of Sequences: 5004
Number of extensions: 45792
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)