Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5043
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    29   2.7  
Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane...    27   8.4  

>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 574 YPCGLTRGPT-PSKNTHNTVCIEI*QPLSNPNNTRSYLDALKQSPFQRSTLTPTYRRFEF 398
           Y  G+++ P+     +  T C +I  P +NP   R+Y  + + S     ++TP+ +    
Sbjct: 558 YTRGISKTPSNQDSRSERTPCSDIHIPYNNPEKERAYQQSERSSYRSHKSVTPSEKSLPR 617

Query: 397 N 395
           N
Sbjct: 618 N 618


>Z46676-4|CAA86669.2|  822|Caenorhabditis elegans Hypothetical
           protein C08B11.4 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 201 AKLRRSYCNERFSGQLHSVNFVSRCARIVKFHSHKFFITRLKKHNFKKNCLGFLK 365
           +++ +S  N+R    LH V F+S C  I+  H++ +  T L   N     + F K
Sbjct: 363 SEILQSKKNDREINSLHGVRFLSMC-WIILGHTYYYIGTSLTTDNLVPTLINFPK 416


>AF173372-1|AAD51972.1|  822|Caenorhabditis elegans transmembrane
           protein NRF-6 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 201 AKLRRSYCNERFSGQLHSVNFVSRCARIVKFHSHKFFITRLKKHNFKKNCLGFLK 365
           +++ +S  N+R    LH V F+S C  I+  H++ +  T L   N     + F K
Sbjct: 363 SEILQSKKNDREINSLHGVRFLSMC-WIILGHTYYYIGTSLTTDNLVPTLINFPK 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,184
Number of Sequences: 27780
Number of extensions: 252182
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)