Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5042
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   6.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   6.0  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 453 RTSEQRRVWCKLLYFENERN 394
           R    RRV C LL F+ + N
Sbjct: 37  RADRHRRVTCDLLSFKGQVN 56


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 453 RTSEQRRVWCKLLYFENERN 394
           R    RRV C LL F+ + N
Sbjct: 37  RADRHRRVTCDLLSFKGQVN 56


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 453 RTSEQRRVWCKLLYFENERN 394
           R    RRV C LL F+ + N
Sbjct: 12  RADRHRRVTCDLLSFKGQVN 31


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +1

Query: 49  IVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIR-----IVEPSYVGM 213
           + N  +   + ++ +L P   N  Y  +A++ L  E  +    V+      IVEP+ V +
Sbjct: 660 VTNMDQYNSILMIEHLSPDH-NGNYSCVARN-LAAEVSHTQRLVVHVPPRWIVEPTDVSV 717

Query: 214 NNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGT 360
                ++L  +  G P   I  +     +S     + E  Y  I+  GT
Sbjct: 718 ERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGT 766


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 505 NLTLNKCTNNNV*CFNT 455
           N  LNK T N++ CF T
Sbjct: 551 NSGLNKITRNSLDCFFT 567


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 505 NLTLNKCTNNNV*CFNT 455
           N  LNK T N++ CF T
Sbjct: 551 NSGLNKITRNSLDCFFT 567


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 37  DSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVP 171
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 326 SHMTRFTNDSNELVYSLWMFMIGQPPPFLA 237
           SH    + D N  VY +W+  +    P LA
Sbjct: 575 SHFINHSCDPNLAVYGVWINCLDPNLPKLA 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,627
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)