Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5041
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   5.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   5.1  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   5.1  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   6.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   6.7  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   6.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   8.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   8.9  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 127 RLVHERKCLSSVKDIIDCYMES*RIIK 47
           R++ +  CL  VKD+ + Y ES + IK
Sbjct: 435 RILQKPLCLEDVKDVDEVYYESLKWIK 461


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 472 FVGFNFVRYKFQTFYEKYYLVHIKS 398
           F+G +FV   F++F+ K YLV   S
Sbjct: 220 FLGHSFVPPNFESFHPKNYLVRNSS 244


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 379 PMVFTDVPL*LLNRASD*LETWYPYRKYMYLMDRLIFIGVLDSLI 245
           P VF D  L +   A   +E WYP   +  + D L+  G ++ L+
Sbjct: 189 PRVFVDSQLPVPKAAPSPIEEWYP-PGHGDIFDALVHSGTIERLL 232


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 156 RIKHKRFHKHD 124
           R+KHKR H+HD
Sbjct: 882 RVKHKRRHRHD 892


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 374 HWRFIY*YRFNMY*IVFFIKRLKFVSY 454
           HW F +   F    + FF + LK VSY
Sbjct: 224 HWNFFFTLGFMALGVFFFRRSLKKVSY 250


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 454 VRYKFQTFYEKYYLVHI-KSILIYKSPM 374
           VR +   FY+KYY  +I K ++I + P+
Sbjct: 197 VRQELLKFYDKYYSANIMKLVIIGREPL 224


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 273 ISLSIKYMYFLYGYQVSSQS-DARFSNYNGTSVKTIGDLYISID 401
           ++  + Y    Y Y + + + D+ +    GTS+ T+G L +S D
Sbjct: 351 VTAGLMYSGIAYNYNLKNATEDSPYQIKLGTSMSTVGGLQVSGD 394


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 99  RPSKISLTVTWNRKELSNNFIYSY*FFLSIL 7
           +P KI + + WN  E   N +  +  F+S+L
Sbjct: 246 KPIKIGIPIDWNVSETHPNVLDKWNEFISLL 276


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 130 TRLVHERKCLSSVKDIIDC 74
           T+ + E KCL++   I+DC
Sbjct: 526 TKKLEEEKCLAAASSIMDC 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,276
Number of Sequences: 5004
Number of extensions: 39110
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)