Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5040
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.49 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.49 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   6.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 158 CKGYWI*WIRKDVSRASTVTGSCMI 84
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 158 CKGYWI*WIRKDVSRASTVTGSCMI 84
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 223 LDKEVDVQPNPCINPLSFSPDL 288
           +D  +DV PN C N  ++  DL
Sbjct: 173 VDLVIDVDPNNCDNTYAYISDL 194


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 420 RPPVLVKLERPSGHQ*TFNHKKKKNSRGGPVPNSPYSE 533
           R    V +ER +G   + N    K  +GGP+   PY +
Sbjct: 79  RDKTFVTIERNNGVPSSLNVVTNKKGKGGPLLR-PYPD 115


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 519 NWVPGPPSSFFFFYD 475
           +WV  P SSF F++D
Sbjct: 78  HWVIHPCSSFRFYWD 92


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 519 NWVPGPPSSFFFFYD 475
           +WV  P SSF F++D
Sbjct: 78  HWVIHPCSSFRFYWD 92


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 519 NWVPGPPSSFFFFYD 475
           +WV  P SSF F++D
Sbjct: 78  HWVIHPCSSFRFYWD 92


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 392 SHPSWLSLCSPTCPGETGKAF 454
           SH +W+   S T PG     F
Sbjct: 544 SHGNWIYPASMTIPGSNSAVF 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,223
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)