Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5037
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 29 0.82
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.4
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 28 1.4
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 27 2.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 3.3
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 26 4.4
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 4.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.8
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 26 5.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.8
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 5.8
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.6
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 28.7 bits (61), Expect = 0.82
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 538 VLQCSSTRQLVP-YLRHDCVCELFHAF 461
V QC+ST + P YLR D + E FH F
Sbjct: 676 VSQCASTDGVTPEYLRTDVLPEFFHCF 702
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = -1
Query: 514 QLVPYLRHDCV--CELFHAFRCSAHAHKLDVSKHLNKIMGAAPKGQMVENILVHEFNVRV 341
Q VP ++H + C + KL S +NK+ A PK ++L N +
Sbjct: 445 QDVPLIKHWYLEHCPPNQPVKVRVSYQKLLKSHVMNKLHMAHPKSHTNRSLLRQLKNTKF 504
Query: 340 TQSDSAIWVSNGIVV 296
QS S WV G+ V
Sbjct: 505 FQSTSIDWVEAGLQV 519
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 577 WPGTFYKSRYGHTFCRNP 630
W FY+ RY HT +NP
Sbjct: 584 WQNLFYEKRYSHTHQKNP 601
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 532 QCSSTRQLVPYLRHDCVCELFHAFR 458
Q + RQ++ +RH +C L++AF+
Sbjct: 136 QTKNERQILEEVRHPFICRLYYAFQ 160
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 233 HRRTFDNDDEFQEADGTPVGADDNSVRYPDGTVRLRNPNIELMDQDILY 379
H T D ++ GT + DN Y D R+ +P DQDIL+
Sbjct: 168 HALTLDTKLRTVQSCGTNLSLLDNFYYYQDHIDRIFDPQYIPSDQDILH 216
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -1
Query: 394 PKGQMVENILVHEFNVRVTQSDSAIWVSNGIVVG 293
PK +++ +++ ++ TQS+S + NG+VVG
Sbjct: 403 PKSALID-LVIATTALKYTQSNSVCYAKNGMVVG 435
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 43 LTTFAQLHRVFSKRRCVV*LSDLFASKVIISWIGLFS 153
LTTFAQ + V S +C + F + VI+ ++GLF+
Sbjct: 402 LTTFAQNNGVISLTKCANRRAGFFCA-VILFFMGLFA 437
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 451 RNTETHGTIRIHNHGGDRAQVALWNYTARHQSFFL 555
R H T + GGD +V +WNY +R F L
Sbjct: 57 RGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSL 91
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 679 ITELSAWYINLYDFVKQDSDRRYAHTVT 596
+T +S + + DFV++ DR YA+ VT
Sbjct: 244 VTRVSEYVPEIVDFVQRIIDRGYAYPVT 271
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 309 LDTQMALSDCVTLTLNSWTKIFSTIWPLGAAPMILLRC 422
LD ++++SD S+ + TIW A +++RC
Sbjct: 1206 LDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRC 1243
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 118 SKVIISWIGLFSCCYYKNERPHQRY 192
S+V I +I F CYY +ER QR+
Sbjct: 207 SEVDIVYICSFCFCYYGSERQFQRH 231
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 185 NGINAVQSQATCSRNPHRRTFDNDDEFQEADGTPVGADDNSVRYPDGTVRLRNPNIELMD 364
NG+N S+ P+ +T +ND Q V ADD V D T+ + N+ +D
Sbjct: 737 NGMNDSASETDLDIQPNHKTSNND---QMGYDQSVSADD--VPEVDNTI-VTEKNVSNLD 790
Query: 365 QDIL 376
Q+ L
Sbjct: 791 QESL 794
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,289
Number of Sequences: 5004
Number of extensions: 67739
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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