Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5037
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.16 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 372 ISWSMSSMLGLRNRTVPSGYLTELS 298
           I W++  ++G+  R VP G+LT  S
Sbjct: 174 IPWALMPVMGVWGRFVPEGFLTSCS 198


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 163 YKNERPHQRY 192
           YKNER +Q+Y
Sbjct: 50  YKNEREYQKY 59


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 416 QQDHGSRSQGPNGREYLGP 360
           QQDHGS   G  G     P
Sbjct: 97  QQDHGSGMDGMGGYRSASP 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,638
Number of Sequences: 438
Number of extensions: 4855
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)