Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5035
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    31   0.57 
Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    27   7.0  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      27   7.0  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    27   7.0  

>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 443 LKEINAKIIINTHEMNQHKIYIN-LENIYHVEYKN 342
           LK +N+K++INT  + ++ + IN +++ YH   +N
Sbjct: 807 LKTVNSKVLINTEFLQENSLTINVIDSCYHENIQN 841


>Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical
           protein F15H9.4 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 41  GSYILIISHGLCSSGIFCLANINY 112
           GS   + SH +CSS +  L+N  Y
Sbjct: 278 GSMFFVASHSMCSSAVMILSNPRY 301


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 240 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 121
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 240 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 121
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 56  IISHGLCSSGIFCLANINYERLHSRSLYINRGM 154
           I+ +G  +S ++CL N N + LH   L++ R +
Sbjct: 730 ILKNGKFASLVWCLQNCNSDELHLEVLHVIRNL 762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,826,490
Number of Sequences: 27780
Number of extensions: 122845
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)