Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5034
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 53 3e-07
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 42 5e-04
04_04_0881 + 29055724-29059197 33 0.19
08_02_1040 - 23873354-23874509,23875645-23875796 30 2.3
02_05_0445 + 29088216-29088362,29089161-29089386,29089903-290899... 29 4.0
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 29 5.3
09_03_0110 + 12432562-12432801,12432811-12433419 28 7.0
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 9.2
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 52.8 bits (121), Expect = 3e-07
Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 11/225 (4%)
Frame = +3
Query: 102 TANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPD 281
TA +E+ KAS R G C F Q + + E K + + VD+ P
Sbjct: 55 TARASAEPLEVCAKASLTVPDRLGDCPFTQRVLLTI----EEKHLPYDIKLVDLANKPDW 110
Query: 282 FRTNFEATHPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDK-EVASLIEN--LYSK 452
F PI+ + +++ I + I + P +K V I N LYS
Sbjct: 111 FLKISPEGKVPIVKLEEQWVADSDVITQAIEEKYPEPSLATPPEKASVILTIGNNFLYSG 170
Query: 453 LKLV------LVRKDEQKSA--ALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQ 608
K+ L KD AL + L D L+ F+ G+T+ D L P+L
Sbjct: 171 SKIFSTFIGFLKSKDPNDGTEQALLSELTSFDSYLKDNGP-FINGETISAADLSLAPKLY 229
Query: 609 HIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCPADQDII 743
H+ +A ++ ++ +P + + +YM ++ +D+F ++ +D+I
Sbjct: 230 HMEIALGHYKNWSVPDSLSHVKKYMKTIFSMDSFVKTIALQEDVI 274
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 41.9 bits (94), Expect = 5e-04
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 2/208 (0%)
Frame = +3
Query: 126 IELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEAT 305
+E+ +KA+ G C F Q + L E K + + V+ P + + E
Sbjct: 3 VEVCVKAAVGHPDTLGDCPFSQRVLLTL----EEKKMFSAASGVETV-PQLFLKISPEGK 57
Query: 306 HPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQ 485
P +G I +++ I + I + P V E AS+ ++S L KD
Sbjct: 58 VPVFNGGDGKWIPDSDVITQVIEEKYPTPS--LVTPPEYASVGSKIFSCFTTFLKSKDPN 115
Query: 486 KSAALRAHLGRIDGLLERRETR--FLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTT 659
+ +A L + L E + F+ G + D L P+L H++VA ++F ++IP
Sbjct: 116 DGSE-KALLTELQALEEHLKAHGPFINGQNISAADLSLAPKLYHLQVALEHFKGWKIPED 174
Query: 660 FRALWRYMYHMYQLDAFTQSCPADQDII 743
+ Y ++ ++F ++ A + +I
Sbjct: 175 LTNVHAYTEALFSRESFIKTKAAKEHLI 202
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 594 MPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCPA 728
+P+LQ++ +AG F ++P F +LW + +++FT S PA
Sbjct: 536 LPQLQYVSLAGNSFSG-DVPEGFSSLWSLRHLNLSVNSFTGSMPA 579
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 565 TLCAVSTAS*CR-GCSTSASPGSTSWTSKYRRRSVLCGVTCITCISLTRSRKAVPP 729
T+CA+S+A+ ST+ + SW+S + T +T S RS +++PP
Sbjct: 89 TICALSSAAGNTIATSTATAHSICSWSSAAGKTIATSTATAMTDSSAARSTRSIPP 144
>02_05_0445 +
29088216-29088362,29089161-29089386,29089903-29089976,
29090129-29090353
Length = 223
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +3
Query: 570 MCCFDCELMPRLQHIRVAGKYFVDFEIPTTFRALWRYMYHMYQLDAFTQSCP 725
MCC+ L QH+ + V + + F A+W ++++ +AF S P
Sbjct: 145 MCCYLSWLRVS-QHLHTLNQVLVGAIVGSAFGAMWFALFNLLVQEAFASSVP 195
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +3
Query: 369 IMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGR-IDGL 530
++K+ GG +V+DK ++ NLYS +L+ V+ ++ ++ A+L +DGL
Sbjct: 368 LLKTTNGGKT-WVRDKAADNIAANLYSVNQLIRVQLTLLQTISVSANLAELVDGL 421
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -3
Query: 166 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 68
R+PS+ ++++ IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 45 LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 158
+ N V + ++DEI N +VP+ L+ AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,934,296
Number of Sequences: 37544
Number of extensions: 482096
Number of successful extensions: 1371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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