Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5032
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.14 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.2  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   6.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 20/83 (24%), Positives = 39/83 (46%)
 Frame = -3

Query: 705 KLLVEIQNLKSNLEQVSSSCENCSALKQNILELQLKNSELEKMNVSLNEKIRDLEINMNE 526
           + L ++ N+K+ L+  + S E    + QNI   +    +    ++S+NE+ R +E   NE
Sbjct: 392 RALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIE---NE 448

Query: 525 AIEEHKKMKITYERKQELNLKKE 457
            +    K    Y  K+  ++  E
Sbjct: 449 QLNRMYKSYPNYIDKETKDMNLE 471


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 287 SRNYGARKAGVAINMNNVGRCPSPVPTLFSYF 382
           + NY      +  N+N + + P PVP  +  F
Sbjct: 102 NNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 287 SRNYGARKAGVAINMNNVGRCPSPVPTLFSYF 382
           + NY      +  N+N + + P PVP  +  F
Sbjct: 102 NNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 287 SRNYGARKAGVAINMNNVGRCPSPVPTLFSYF 382
           + NY      +  N+N + + P PVP  +  F
Sbjct: 102 NNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 140 CNFLLLDIARKRNRCEGIITLNCLEPLVN 54
           CN +L  + R R   + + T    EP+ N
Sbjct: 8   CNKILTSLTRLRRHIQNVHTRPSKEPICN 36


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 326 NMNNVGRCPSPVPTLFSYF 382
           N+N++ + P PVP  +  F
Sbjct: 105 NINHIEQIPVPVPVYYGNF 123


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 293 NYGARKAGVAINMNNVGRCPSPVPTLFSYF 382
           NY      +  N+N + + P PVP  +  F
Sbjct: 99  NYNNNCKKLYYNINYIEQIPIPVPVYYGNF 128


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/60 (20%), Positives = 25/60 (41%)
 Frame = -3

Query: 735 QNKDLLENQGKLLVEIQNLKSNLEQVSSSCENCSALKQNILELQLKNSELEKMNVSLNEK 556
           +N D L+NQ   +   +N       +      C+     + EL++   +++ +N   N K
Sbjct: 172 KNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTRHNTK 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,027
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)