Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5030
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0715 + 5463705-5463853,5463934-5464287,5464849-5464932,546...    29   4.7  
07_01_0712 - 5381641-5381667,5382107-5382261,5382917-5383006,538...    29   4.7  
08_01_0465 + 4099721-4100556,4101505-4103614                           28   6.2  
06_01_0817 - 6185881-6187074                                           28   8.3  

>07_01_0715 +
           5463705-5463853,5463934-5464287,5464849-5464932,
           5465170-5465270,5465603-5465665,5466198-5466287,
           5466390-5466479,5467135-5467289,5467729-5467755
          Length = 370

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 260 LISAPEAKFLERSSLWDDAEGY 325
           L+S P  + L  SS+WDDA GY
Sbjct: 58  LVSLPRLERLITSSMWDDAIGY 79


>07_01_0712 -
           5381641-5381667,5382107-5382261,5382917-5383006,
           5383109-5383198,5383731-5383793,5384126-5384226,
           5384464-5384547,5385109-5385462,5385543-5385691
          Length = 370

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 260 LISAPEAKFLERSSLWDDAEGY 325
           L+S P  + L  SS+WDDA GY
Sbjct: 58  LVSLPRLERLITSSMWDDAIGY 79


>08_01_0465 + 4099721-4100556,4101505-4103614
          Length = 981

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 115 NVQSIIRGILFRELFTRLGGALTFTFARPFFLRCANVLSRVPGEHLSIFNICS 273
           N++ + R    + L+TR+  A      RP  + C  +L++  G  L+I  I S
Sbjct: 327 NMEPLSRDDSEKLLYTRIASAEGKCLTRPSAVACEKILNKCDGVPLAIITIAS 379


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 YLISAPEAKFLERSSLWDDAEGYPNWEKTS 346
           Y+    +  F E S + DD  G P+W+K +
Sbjct: 336 YVKKVKKGPFAEHSPMLDDISGVPHWKKVN 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,717,476
Number of Sequences: 37544
Number of extensions: 333254
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)