Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5030
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 511 ILYIYKWWLRILGARGPMERLRCRQCSTI-SWLATTDT 621
           + Y Y WW  +LG    +  + C     I  W  T+ T
Sbjct: 520 LTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGT 557


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = +1

Query: 511 ILYIYKWWLRILGARGPMERLRCRQCSTI-SWLATTDT 621
           + Y Y WW  +LG    +  + C     I  W  T+ T
Sbjct: 573 LTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGT 610


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 671 KIIANRKQRYSETYTSRV 618
           KII +R +RYS+ ++S +
Sbjct: 15  KIIRSRSRRYSKRFSSSI 32


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 392 CGVYIFCVALSLFYCKVLL 448
           C V  FCV +   YCK  +
Sbjct: 284 CWVPFFCVNIVTSYCKTCI 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,900
Number of Sequences: 438
Number of extensions: 3713
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)