Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5029
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    31   0.11 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    31   0.11 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.7  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   5.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.3  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 307 RNHRFRQTCLITKTAERFATRCFTISTQKVDVNTSTEILHNCRVKQKKQYVFHINKIHIS 128
           R++       +TK ++R A   +T+  + +D+ T    L N     KK++V  +  I  +
Sbjct: 315 RSYTEHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSN 374

Query: 127 KLFYN 113
              YN
Sbjct: 375 CFLYN 379


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 15/58 (25%), Positives = 36/58 (62%)
 Frame = -1

Query: 277 ITKTAERFATRCFTISTQKVDVNTSTEILHNCRVKQKKQYVFHINKIHISKLFYNKQT 104
           +   A+RF +  F+++T+K+DVN  T+++    + + ++Y+  + +   S+ F NK++
Sbjct: 788 LVNMAKRFLSSLFSVNTRKMDVNVKTDLVIGENI-ELQRYLQQLTQ--YSEKFLNKES 842


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 195  SYITAELNKKNNTFFILIKYIFQNY 121
            S+  +E  K+N TF +LIK +F N+
Sbjct: 1160 SFSISEFGKENATFTLLIKLVFINW 1184


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 292 RQTCLITKTAERFATRCFTISTQKVDVNTSTEILHNCRVKQKKQYVFHINKIHISKLFYN 113
           R  CLI   A      CFT +    +V     I+    V   +Q+  HIN++H    FY 
Sbjct: 292 RTGCLIG--AYLIYKHCFTAN----EVIAYMRIMRPGMVVGPQQHWLHINQVHFRAYFYE 345

Query: 112 K 110
           K
Sbjct: 346 K 346


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 34  SVFLNVQAEMRNFSDKSNECIML*FV 111
           S F+N Q E RNF  KSN      F+
Sbjct: 218 SDFINFQKEERNFRGKSNSAFYNDFI 243


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 304 YVFYFLIISYYNFIFT 351
           + FYF + S+++F+FT
Sbjct: 110 FFFYFSLFSFFSFLFT 125


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = -1

Query: 226 QKVDVNTSTEILHNCRVKQKKQYVFHINKIHISKLFYNKQTITLCIHYFYH 74
           ++ +++  T+I  NC +  +  ++FH N     +    ++T    +  FYH
Sbjct: 699 KQANMSIITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAILIRFYH 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,698
Number of Sequences: 5004
Number of extensions: 36549
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)