Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5029
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0730 + 6505759-6508806                                           30   1.0  
12_01_0714 + 6223269-6226250                                           30   1.0  
12_01_0686 - 5855216-5858263                                           29   2.3  
12_01_0740 + 6646471-6649407                                           28   5.4  
12_01_0722 + 6355972-6359031                                           28   5.4  
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    27   9.4  

>12_01_0730 + 6505759-6508806
          Length = 1015

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 433 IIVNLSHNNFISL*SNSFLRRHCE 504
           I++N+SHNNF SL S+ FL  + E
Sbjct: 563 IVLNISHNNFTSLGSDPFLPLYVE 586


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 433 IIVNLSHNNFISL*SNSFLRRHCE 504
           I++N+SHNNF SL S+ FL  + E
Sbjct: 541 IVLNISHNNFTSLGSDPFLPLYVE 564


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 433 IIVNLSHNNFISL*SNSFLRRHCE 504
           +++N+SHNNF SL S+  L  H E
Sbjct: 563 LLLNMSHNNFTSLGSDPLLPLHIE 586


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 436 IVNLSHNNFISL*SNSFLRRHCE 504
           ++NLSHNNF S+ SN  L  + E
Sbjct: 525 LLNLSHNNFTSIGSNPLLPLYIE 547


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 436 IVNLSHNNFISL*SNSFLRRHCE 504
           ++NLSHNNF S+ SN  L  + E
Sbjct: 566 LLNLSHNNFTSIGSNPLLPLYIE 588


>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 211 NTSTEILHNCRVKQKKQYVFHIN 143
           +++T +LHN    +K  YV HIN
Sbjct: 118 SSTTTLLHNLNQAEKSSYVAHIN 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,404,435
Number of Sequences: 37544
Number of extensions: 167333
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)