Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5026
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    29   0.95 
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    27   2.2  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    27   2.9  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   5.1  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   6.7  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    25   8.9  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 88  PLLRPSSSEDTLPSAAGDTTPRCLSDTRKPRATV*TP 198
           P+  P ++ D++ +A  DT+P+ L D  KP     +P
Sbjct: 300 PVAVPQNTSDSVGNAVTDTSPKTLFDPLKPNTGTPSP 336



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 562 DHTESRPHHRPTALPIIKRT 621
           DH++S P  R + LPIIK++
Sbjct: 375 DHSKSLPVQRASVLPIIKQS 394


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 397 WATWIACWRCSSSMPTILS 341
           W   + CW C +  PT+LS
Sbjct: 110 WMEMLDCWSCHTDYPTVLS 128


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 572 SPVPIIVLRRSPSLNELSHSHILSL 646
           SP PI +    PSLN+ + SH LSL
Sbjct: 215 SPSPISMKMDMPSLNDRNSSHALSL 239


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 56  GRRASGRLQLLRSFVHRHRRTLFPQQRGTLHP 151
           G    GRL LL + V +  + +F + RGT  P
Sbjct: 301 GMAHRGRLNLLHNIVRKPAQAIFSEFRGTQDP 332


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 578 VPIIVLRRSPSLNELSHSHIL 640
           +P+I++  SP+ N+LS  H+L
Sbjct: 98  LPVILVSGSPNTNDLSSGHLL 118


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 578 VPIIVLRRSPSLNELSHSHIL 640
           +P+I++  SP+ N++  SH+L
Sbjct: 103 LPVILISGSPNTNDIGSSHLL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,315
Number of Sequences: 5004
Number of extensions: 35762
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)