Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5026
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0281 - 2067696-2068862                                           29   3.0  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    29   4.0  
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277...    29   4.0  
05_03_0198 + 9612767-9613243                                           28   9.3  

>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 98  VHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRPPSAREDQDHHP 229
           +H HR   FP       P    T G+   Q +   A ++ DH P
Sbjct: 145 LHEHRAAPFPAPAPAFAPAPAGTMGSSSAQVQGDGAPDNHDHDP 188


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 551 SPLRIIRSPVPIIVLRRSPSLNELSHSHILSLHNNLCNETSCDR 682
           SPL +  +P+PI +    P+  +L+  H  S+H++   E +C R
Sbjct: 31  SPLFVESTPIPISLSPYKPNSLDLNDDHDNSVHDDGGGEKTCRR 74


>01_01_0349 +
           2776093-2776566,2778211-2778729,2778813-2779048,
           2779135-2779410,2779447-2779549,2780058-2780330
          Length = 626

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 134 AAEGRVSSDDDGRRSGVAVTDRRLGGHAAD 45
           A  G V++DD GR S V     R GGHAAD
Sbjct: 80  AGVGAVAADD-GRCSEVGAAALRAGGHAAD 108


>05_03_0198 + 9612767-9613243
          Length = 158

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 47  RLRGRRASGRLQLLRSFVHRHRRTLFPQQRGTLHPGACRTPGNRGLQCRP 196
           ++ GR A G L LLR F H H  T F +++ +L P + ++      Q +P
Sbjct: 27  KVNGRWARGLLALLRHFNHCH--TYFSRRQFSLQPRSSQSLSRPTDQAQP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,890
Number of Sequences: 37544
Number of extensions: 280033
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)