Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5023
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    27   7.3  
11_01_0080 - 619886-619979,620298-620815                               27   9.7  

>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 133 NFSNRSSSFGAYSKQTNKQIFPLYNISI 216
           ++   S  FG Y  QTN+  +P Y+  I
Sbjct: 234 SYGRPSGRFGNYQNQTNRTTYPCYSSQI 261


>11_01_0080 - 619886-619979,620298-620815
          Length = 203

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 347 HHPTTRN*NFELKPYGI 397
           HHPTT N  FE+  YG+
Sbjct: 112 HHPTTSNHCFEVLSYGV 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,024
Number of Sequences: 37544
Number of extensions: 155900
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)