Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5022
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    27   8.5  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    27   8.5  

>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -3

Query: 300 VDKKCYAIALLRQFPSATRFSYFIRRVIPSPWKSIVNNC*VRISLAKLVPACEIST--PM 127
           VDK CY    LR+     + S        +PW S+   C   +S+ K +   +  T   +
Sbjct: 343 VDKCCYLAITLRRKKDTYKLSKLPADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVKEL 402

Query: 126 HRKIQMH----RTSYPVGSEFSNILVV 58
           + KI  H    ++S  V ++F  IL V
Sbjct: 403 YAKINSHLTILKSSLQVINKFEAILKV 429


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical protein
            T20G5.5 protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 263  SSQVPHVFLILLDVLFLHRGSQS 195
            S  +P V LIL D++F+H+G++S
Sbjct: 1137 SPYIPFVPLILKDLMFIHQGNKS 1159


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 550 PIDIYNVNAPPTLRYKF*GLSIVITAAPLFKPKGVTASRQTRDLAYECEGDS 395
           P  I +  A   L+ +   L  + T   L  P+  TA+ +TR LAY  + ++
Sbjct: 312 PFIIQSPKAKNNLKQRMNALPELSTMTELTNPRFCTANEETRSLAYNVKDET 363


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 550 PIDIYNVNAPPTLRYKF*GLSIVITAAPLFKPKGVTASRQTRDLAYECEGDS 395
           P  I +  A   L+ +   L  + T   L  P+  TA+ +TR LAY  + ++
Sbjct: 312 PFIIQSPKAKNNLKQRMNALPELSTMTELTNPRFCTANEETRSLAYNVKDET 363


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 550 PIDIYNVNAPPTLRYKF*GLSIVITAAPLFKPKGVTASRQTRDLAYECEGDS 395
           P  I +  A   L+ +   L  + T   L  P+  TA+ +TR LAY  + ++
Sbjct: 312 PFIIQSPKAKNNLKQRMNALPELSTMTELTNPRFCTANEETRSLAYNVKDET 363


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 550 PIDIYNVNAPPTLRYKF*GLSIVITAAPLFKPKGVTASRQTRDLAYECEGDS 395
           P  I +  A   L+ +   L  + T   L  P+  TA+ +TR LAY  + ++
Sbjct: 312 PFIIQSPKAKNNLKQRMNALPELSTMTELTNPRFCTANEETRSLAYNVKDET 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,070
Number of Sequences: 27780
Number of extensions: 274816
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)