Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5021
(527 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK092019-1|BAC03791.1| 795|Homo sapiens protein ( Homo sapiens ... 50 5e-06
AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein. 50 5e-06
AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein. 50 5e-06
X76092-1|CAA53706.1| 707|Homo sapiens DNA binding protein RFX3 ... 29 7.6
BC067778-1|AAH67778.1| 413|Homo sapiens RFX3 protein protein. 29 7.6
BC022191-1|AAH22191.1| 749|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL365202-6|CAI13404.1| 707|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL365202-5|CAI13403.1| 749|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL354941-6|CAI41216.1| 707|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL354941-5|CAI41215.1| 749|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL133549-2|CAI40200.1| 707|Homo sapiens regulatory factor X, 3 ... 29 7.6
AL133549-1|CAI40199.1| 749|Homo sapiens regulatory factor X, 3 ... 29 7.6
>AK092019-1|BAC03791.1| 795|Homo sapiens protein ( Homo sapiens
cDNA FLJ34700 fis, clone MESAN2002687. ).
Length = 795
Score = 50.0 bits (114), Expect = 5e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 415 LGLMHLKKLFAEYTHPQQPLTDAEKDDKLYNMLPLF 522
LGLMHL++LF E HP + +T E+++KLY MLP+F
Sbjct: 23 LGLMHLRRLFTELCHPPRHMTQKEQEEKLYMMLPVF 58
>AF538685-1|AAN15137.1| 3526|Homo sapiens ALFY protein.
Length = 3526
Score = 50.0 bits (114), Expect = 5e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 415 LGLMHLKKLFAEYTHPQQPLTDAEKDDKLYNMLPLF 522
LGLMHL++LF E HP + +T E+++KLY MLP+F
Sbjct: 23 LGLMHLRRLFTELCHPPRHMTQKEQEEKLYMMLPVF 58
>AC095046-1|AAY40903.1| 2407|Homo sapiens unknown protein.
Length = 2407
Score = 50.0 bits (114), Expect = 5e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 415 LGLMHLKKLFAEYTHPQQPLTDAEKDDKLYNMLPLF 522
LGLMHL++LF E HP + +T E+++KLY MLP+F
Sbjct: 23 LGLMHLRRLFTELCHPPRHMTQKEQEEKLYMMLPVF 58
>X76092-1|CAA53706.1| 707|Homo sapiens DNA binding protein RFX3
protein.
Length = 707
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>BC067778-1|AAH67778.1| 413|Homo sapiens RFX3 protein protein.
Length = 413
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>BC022191-1|AAH22191.1| 749|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 749
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL365202-6|CAI13404.1| 707|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 707
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL365202-5|CAI13403.1| 749|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 749
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL354941-6|CAI41216.1| 707|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 707
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL354941-5|CAI41215.1| 749|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 749
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL133549-2|CAI40200.1| 707|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 707
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
>AL133549-1|CAI40199.1| 749|Homo sapiens regulatory factor X, 3
(influences HLA class II expression) protein.
Length = 749
Score = 29.5 bits (63), Expect = 7.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 442 IASSGASVQVGREMRNLSPRQIRTTPRKMPHAICASNSF*LLHK*YNHTIIRRTLIKSVP 263
I+SSG + +G M N S + T R P I + L K + R +L+ S
Sbjct: 128 ISSSGGTYLIGNSMEN-SGHSVTHTTRASPATI--EMAIETLQKSDGLSTHRSSLLNSHL 184
Query: 262 ISILNNYLCIESNYYASKTY*NYFTNHC 179
+L+NY E T N++ HC
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHC 212
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,998,551
Number of Sequences: 237096
Number of extensions: 1015334
Number of successful extensions: 1700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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