Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5019
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329...    30   0.76 
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   1.3  
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    27   5.3  
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044...    27   7.1  
01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    27   9.3  

>09_04_0254 +
           16131779-16132475,16132609-16132768,16132944-16132992,
           16133158-16133271,16133434-16133958,16135538-16135969,
           16138882-16138956,16139530-16139625,16140610-16140725,
           16140822-16140992,16141080-16141239,16141328-16141513,
           16141624-16141752,16141837-16141915,16142034-16142143
          Length = 1032

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 262 YNSLFWYKTFFYSHHFMYYIYKVVIVNHLYVLQLI 158
           +N L  +  F+YSHH +  +Y ++I  H Y L L+
Sbjct: 619 FNRLAGFNAFWYSHHLLGIVYALLIA-HGYFLFLV 652


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 259 NSLFWYKTFFYSHHFMYYIYKVVIVNHLYV 170
           N L  +  F+YSHH    +Y ++IV+  Y+
Sbjct: 562 NRLTGFNAFWYSHHCFVIVYALLIVHGYYL 591


>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 244 YKTFFYSHHFMYYIYKVVIVNHLYVLQLIT 155
           +  F+YSHH +  +Y +++V H + + L+T
Sbjct: 651 FNAFWYSHHLLIVVYLLLLV-HGWFMFLVT 679


>04_04_1584 +
           34601927-34602144,34603324-34603510,34604239-34604496,
           34604866-34604965,34608523-34608639,34608704-34608804,
           34609035-34610141
          Length = 695

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 250 FWYKTFFYSHHFMYYIYKVVIVNHLYVL 167
           F    FFY+ H M Y Y  ++ N   VL
Sbjct: 622 FCIARFFYTRHLMGYYYDQIVDNRFVVL 649


>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 262 YNSLFWYKTFFYSHHFMYYIYKVVIVN 182
           ++ L  +  F+YSHH    +Y  +IV+
Sbjct: 361 FDKLTGFNAFWYSHHLFIIVYIALIVH 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,110
Number of Sequences: 37544
Number of extensions: 161320
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)